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greengenes

Here are 4 public repositories matching this topic...

pirovc / multitax

Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)

python taxonomies tree bioinformatics taxonomy ncbi ott silva greengenes gtdb pyhton-library open-tree-taxonomy biological-taxonomies

Updated Sep 6, 2024
Python

glickmac / OTU_Groupings

workflow microbiome qiime merging silva biom otus greengenes

Updated Nov 21, 2017
Shell

mmtechslv / taxamatcher

Correlates target taxonomy(i.e consensus lineages) with a reference taxonomy such as Greengenes, SILVA, etc.

bioinformatics taxonomy metagenomics lineage taxonomy-assignment silva taxonomic-classification taxon taxa greengenes

Updated Mar 16, 2021
Python

PhyloMAF

mmtechslv / PhyloMAF

Next Generation Phylogenetic Microbiome Analysis Framework

bioinformatics taxonomy phylogenetic-trees phylogenetics microbiome ott taxonomy-assignment silva microbiome-analysis taxonomic-classification otu-table greengenes 16s-rrna

Updated Apr 23, 2022
Python

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