Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy

Read and write TIFF files.

Read and write ImageJ ROI format.

Fully Ported to Python from ImageJ's Background Subtractor. Rolling ball and sliding paraboloid background subtraction algorithms.

Use ImageJ functionality from napari

A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification

An interactive image processing program for biologists written in Python.

ImageJ scripts for stereology and morphometry

This is an implementation of NeuronJ work with python.

Scripts for executing Fiji plugin BoneJ in headless mode in Python to compute bone microstructure metrics

Experimental support to read and write overlay (ROI) information from ImageJ/Fiji TIFFs.

This directory contains all the elements and structure of the napari-aphid plugin

🔬 NoiSee: An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

PyImageJ script to convert lab photos

Connect Napari with FIJI/ImageJ

Preprocess, noise-reduction, threshold & quantify images to get box plots for each class (mainly cell cultures of different cel llines). Colocalization due to a naive trick of counting all overlapping signals/pixels. Could be done in ImageJ as well, but i thought this is better suited than fiddling with macros.

A repository containing ImageJ macros for the Snyder Lab

Fiji/ImageJ plugin to help measuring linear distances.

A Python script that uses Python libraries, ImageJ, and ImageMagick to automatically convert a scanned PDF with two A4 pages, into a single A3.

A unified non-supervised framework for characterizing colorectal cancer using endomicroscopic images