🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app

simpler single cell RNAseq data clustering

[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.

R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

An R Interface to the ImmuneSpace database portal

An R package to analyze single-cell V(D)J data

Immunology Informatics - Big Data Analysis in Immunology - Tutorials

🐶 hlabud: HLA genotype analysis in R

Code for Celia and Nils' immune aging project.

Comparison of gene usage in immune repertoires under different biological conditions

Pipeline for tumor immunology

Bayesian models used in CD56bright natural killer cells preferentially kill proliferating CD4+ T cells

PICAFlow: a complete R workflow dedicated to flow/mass cytometry data, from data pre-processing to deep and comprehensive analysis.

Clustering of immune receptor repertoires

R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data

ABPEPserver is an online database and analytical platform that offers the visualization of a large-scale tumour proteomics analysis of Substitutant expression across multiple tumour types.

Immune cell phenotyping of lung cancer and lung tissue using PCA, tSNE, and other techniques

Suit of statistical procedures for robust quantification of various BCR and TCR repertoire properties