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krona

Here are 5 public repositories matching this topic...

nf-core / hgtseq

A pipeline to investigate horizontal gene transfer from NGS data

taxonomies workflow pipeline nextflow ngs tidyverse multiqc samtools bwa-mem horizontal-gene-transfer genomics-visualization fastqc nf-core krona kraken2 bwa-mem2 ggbio

Updated Oct 11, 2024
Nextflow

OpenOmics / weave

An awesome BCL demultiplexing and FastQ quality-control pipeline

kaiju bcl2fastq fastp krona kraken2 bclconvert fastq-quality-control contamination-screening disambiguate-genomes

Updated Feb 28, 2024
Python

scott-rdl / OTU-table-to-KRONA-pie

This bash script is used to generate a one page KRONA html from a rarified multi samples OTU table.

bioinformatics pie otu otu-table bioinformatics-tool krona krona-pie page-krona-html

Updated May 28, 2018
Shell

gaenssle / Krona_DataExtractor

Extract raw data from krona.html files and count the reads at each taxonomy level

python taxonomy metagenomics krona

Updated Jul 3, 2023
HTML

casperp / Dwarf-Fortress-Krona

Make beautiful Krona plots from dwarf fotress world sites and pops file.

plot dwarf-fortress krona-charts krona krona-pie krona-plots

Updated Nov 18, 2018
Python

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