A Java Desktop application with a graphical user interface for the discovery of colinear syntenic blocks across thousands microbial genomes
-
Updated
Feb 15, 2023 - Java
#
microbial-genomics
Here are 8 public repositories matching this topic...
An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.
genomics reproducible-research microbial-genomics comparative-genomics sequence-analysis virus-evolution
-
Updated
Dec 20, 2024 - Java
Call core SNPs agains a reference genome for a set of bacterial isolates, and build a phylogenetic tree based on the core-genome SNP information.
-
Updated
Nov 20, 2020 - Java
Determine the MLST sequence type for samples using PubMLST schemes in the IRIDA system
-
Updated
Jun 20, 2019 - Java
Detect the presence of specific resistance genes in a sample using the IRIDA system
-
Updated
Oct 13, 2020 - Java
Estimate the relative abundance of sequence reads originating from different species in a sample using the IRIDA system
metagenomics bioinformatics-pipeline microbial-genomics species-abundance-distributions species-identification irida-pipeline
-
Updated
Jun 2, 2023 - Java
Sequence Analysis Pipeline for the IRIDA Platform for Viral Genomes
-
Updated
Nov 21, 2020 - Java
Determine the sequence type of specific transposable elements in bacterial isolates.
-
Updated
Oct 13, 2020 - Java
Improve this page
Add a description, image, and links to the microbial-genomics topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the microbial-genomics topic, visit your repo's landing page and select "manage topics."