System for the automated classification of white blood cells (leukocytes)
Repository for single-layer 3D TFM for measuring cellular displacements and tractions with epifluorescence microscopy
A web app that uses a custom-built Keras model to recognize and classify white blood cells from microscopic images. It can distinguish between different types of WBCs and identify artifacts and bursted cells. I created this app as a way to explore image recognition technologies and to learn how to develop Keras models from scratch.
Analysis associated with the publication, "Change in neutrophil to lymphocyte ratio during immunotherapy treatment is a non-linear predictor of patient outcomes in advanced cancers" DOI : 10.1007/s00432-019-02982-4
Companion scripts for my PhD thesis in Bioinformatics.
The R code used for analysis of mouse single cell gene expression data. Published article: Testosterone exacerbates neutrophilia and cardiac injury in myocardial infarction via actions in bone marrow, Nat. Comm. Publication date: 5 feb 2025. Open access.
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