protein-secondary-structure

Here are 8 public repositories matching this topic...

peace195 / multitask-learning-protein-prediction

Multitask learning: protein secondary structure prediction, b-values prediction and solvent-accessibility prediction

deep-learning tensorflow lstm bidirectional-lstm protein-secondary-structure multitask-learning protein-b-values protein-solvent-accessibility protein-deep-learning-algorithm protvec

Updated Aug 23, 2018
Python

thuxugang / opus_fold

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OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling

protein-secondary-structure protein-folding protein-scoring-functions protein-contact-map opus-fold protein-strucutre-prediction protein-side-chain-modeling protein-torsion-angles protein-potential-functions

Updated May 4, 2020

thuxugang / opus_tass

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OPUS-TASS: A Protein Backbone Torsion Angles and Secondary Structure Predictor Based on Ensemble Neural Networks

protein-secondary-structure protein-torsion-angles opus-tass

Updated Jul 9, 2020
Python

gkoulouras / seq-sec-ratio

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A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.

bioinformatics pdb protein-data-bank protein-sequences vb-net bioinformatics-data amino-acids secondary-structure bioinformatics-scripts bioinformatics-databases pdb-files ss-txt protein-secondary-structure

Updated May 8, 2019
Visual Basic

katarinaelez / protein-ss-pred

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Protein secondary structure predictor

svm gor protein-secondary-structure secondary-structure-prediction

Updated Jan 28, 2019
Jupyter Notebook

PSSpred (Protein Secondary Structure prediction) is a simple neural network training algorithm for accurate protein secondary structure prediction. It first collects multiple sequence alignments using PSI-BLAST. Amino-acid frequence and log-odds data with Henikoff weights are then used to train secondary structure, separately, based on the Rumel…

protein prediction-algorithm psi-blast nerual-network protein-secondary-structure acid-frequence henikoff-weights