samtools

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Learning the Sequence Alignment/Map format

bam-files sam bam samtools bam-flags

Snakemake pipeline for Popoolation and Popoolation2

workflow snakemake genomics ngs population samtools popoolation popoolation2 bowtie2 snakemake-workflows

A script to report depth of coverage from BAM/SAM/CRAM file or parse the output generated from "samtools depth"

coverage ngs sam bam samtools cram

Udo Stenzel's perl-ngs — a collection of Perl tools for next-generation sequencing [MIRROR]

bam-files perl ngs next-generation-sequencing phylogenetics perl5 bed bam samtools phylogeny

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