viral-ngs

Here are 7 public repositories matching this topic...

broadinstitute / viral-ngs

Viral genomics analysis pipelines

genomics genome variant-calling bam genome-sequencing illumina fastq genome-assembly variant-annotations viral-ngs viral

Updated Sep 20, 2024
Python

virtool / virtool

Star

Viral infection diagnostics using next-generation sequencing

bioinformatics web-app diagnostics viral-ngs

Updated Nov 15, 2024
Python

nf-core / vipr

Star

Assembly and intrahost / low-frequency variant calling for viral samples

workflow virus pipeline nextflow metagenomics viruses variant-calling genome-assembly viral-ngs viral viral-genomics viral-metagenomics nf-core

Updated Feb 12, 2020
Nextflow

agudeloromero / EVEREST

Star

Viral genome assemble and characterisation

genome-annotation genome-analysis genome-assembly viral-ngs viral-genomics viral-metagenomics

Updated Oct 17, 2023
Python

gFedonin / VirGenA

Star

A reference guided assembler of highly variable viral genomes

bioinformatics ngs genome-assembly viral-ngs viral-genomics

Updated Mar 12, 2019
Java

cvisb / cvisb_data

Star

Data portal and API for Center for Viral Systems Biology (CViSB) data

biology systems-biology sequencing immunology systemsbiology hla viral-ngs viral-genomics ebola viral-metagenomics ebola-outbreak hla-database hla-typing ngs-data immunological-bioinformatics viral-diversity viral-allele lassa lassa-fever

Updated Jan 13, 2023
TypeScript

broadinstitute / viral-ngs-deploy

Star

Deployment files related to https://github.com/broadinstitute/viral-ngs

docker deployment viral-ngs

Updated Oct 30, 2017
Shell

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viral-ngs

Here are 7 public repositories matching this topic...

broadinstitute / viral-ngs

virtool / virtool

nf-core / vipr

agudeloromero / EVEREST

gFedonin / VirGenA

cvisb / cvisb_data

broadinstitute / viral-ngs-deploy

Improve this page

Add this topic to your repo