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stop with an error message if Q values are below or above thresholds
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@@ -1,6 +1,7 @@ | ||
`--fastq_qmax` *positive integer* | ||
: Specify the maximal quality score accepted when reading fastq | ||
sequences. Reads with higher quality scores are discarded. Accepted | ||
values range from 0 to 93 if the offset is 33 (see `--fastq_ascii`), | ||
or range from 0 to 62 if the offset is 64. The default is 41, which | ||
is usual for recent Sanger/Illumina 1.8+ files. | ||
sequences. Stop with an error message if a quality scores higher | ||
than the specified value is read. Accepted values range from 0 to 93 | ||
if the offset is 33 (see `--fastq_ascii`), or range from 0 to 62 if | ||
the offset is 64. The default is 41, which is usual for recent | ||
Sanger/Illumina 1.8+ files. |
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@@ -1,7 +1,8 @@ | ||
`--fastq_qmin` *positive integer* | ||
: Specify the minimal quality score accepted when reading fastq | ||
sequences. Reads with lower quality scores are discarded. Accepted | ||
values range from 0 to 93 if the offset is 33 (see `--fastq_ascii`), | ||
or range from 0 to 62 if the offset is 64. The default is 0, which | ||
is usual for recent Sanger/Illumina 1.8+ files. Older formats may | ||
use scores between -5 and 2. | ||
sequences. Stop with an error message if a quality scores lower than | ||
the specified value is read. Accepted values range from 0 to 93 if | ||
the offset is 33 (see `--fastq_ascii`), or range from 0 to 62 if the | ||
offset is 64. The default is 0, which is usual for recent | ||
Sanger/Illumina 1.8+ files. Older formats may use scores between -5 | ||
and 2. |