Merge pull request #84 from usegalaxy-eu/pandas-fix

Add support for pandas 2.0 support + lock versions
usegalaxy-eu · Aug 29, 2023 · da4486a · da4486a
2 parents e372158 + e89dcf2
commit da4486a
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Showing 4 changed files with 11 additions and 8 deletions.
diff --git a/.gitignore b/.gitignore
@@ -1,2 +1,5 @@
 .vscode/launch.json
 .secret.yml
+build/
+ena_upload_cli.egg-info/
+ena_upload/__pycache__/
diff --git a/ena_upload/_version.py b/ena_upload/_version.py
@@ -1 +1 @@
-__version__ = "0.6.2"
+__version__ = "0.6.3"
diff --git a/ena_upload/templates/ENA_template_runs.xml b/ena_upload/templates/ENA_template_runs.xml
@@ -11,7 +11,7 @@ def attributetest(row, column):
     xmlns:xi="http://www.w3.org/2001/XInclude"
     xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
     xsi:noNamespaceSchemaLocation="ftp://ftp.sra.ebi.ac.uk/meta/xsd/sra_1_6/SRA.run.xsd">
-    <py:for each="alias, experiment_alias in run_groups.iteritems()">
+    <py:for each="alias, experiment_alias in run_groups.items()">
     <RUN alias="${alias}" center_name="${center}">
         <EXPERIMENT_REF refname="${experiment_alias}"/>
         <DATA_BLOCK>

diff --git a/requirements.txt b/requirements.txt
@@ -1,6 +1,6 @@
-genshi
-lxml
-pandas>=1.2
-pyyaml
-requests
-openpyxl
+genshi==0.7.*
+lxml>=4.9.3, <= 5.0.0
+pandas>=2.0.3 , <= 3.0.0
+pyyaml==5.* 
+requests>=2.31.0 , <= 3.0.0
+openpyxl>=3.1.2 , <= 4.0.0