Skip to content
New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

Use ONT style for reading/writing fast5 data #55

Open
kdoroschak opened this issue Apr 30, 2020 · 0 comments
Open

Use ONT style for reading/writing fast5 data #55

kdoroschak opened this issue Apr 30, 2020 · 0 comments

Comments

@kdoroschak
Copy link
Member

Implement raw data writing using a similar strategy to fast5_research. We are already doing parts of this, but updating all of it to be as similar to ONT as possible is a good idea.

  • For reading strings: use np.char.decode()
  • For writing strings: my_string.encode()
  • For writing raw data: verify how they handle dtypes, especially for compound datasets
@kdoroschak kdoroschak added validation Verify code correctness and removed validation Verify code correctness labels Apr 30, 2020
# for free to join this conversation on GitHub. Already have an account? # to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant