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35 Open 42 Closed
35 Open 42 Closed
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Issues list

Save good channels to fast5 in segment.py
#102 opened Mar 17, 2021 by kdoroschak
Parameterize or define hardcoded values in judge_channels
#101 opened Mar 17, 2021 by kdoroschak
Implement Classification; Restore Classification unit tests
#92 opened Feb 17, 2021 by thequicksort 1.0.0
@thequicksort
Implement plugins for Filters and Classifiers
#91 opened Feb 17, 2021 by thequicksort 1.0.0
Implement Filtering; Restore Filtering
#90 opened Feb 17, 2021 by thequicksort
Restore quantify unit tests
#89 opened Feb 17, 2021 by thequicksort
Restore Filtering unit tests
#88 opened Feb 17, 2021 by thequicksort 1.0.0
@thequicksort
Optimize time and space consumption. enhancement New feature or request
#85 opened Feb 6, 2021 by thequicksort 1.1
2
Plumb through the new Signal and H5 models
#83 opened Feb 4, 2021 by thequicksort 1.0.0
@thequicksort
1
Implement getters for data in the fast5 files
#81 opened Feb 2, 2021 by kdoroschak
Implement compression for fast5 files enhancement New feature or request
#79 opened Feb 2, 2021 by kdoroschak
Move modules up 1 level
#78 opened Feb 2, 2021 by kdoroschak
Create a demo jupyter notebook documenting usage
#77 opened Feb 2, 2021 by kdoroschak 1.0.0
Deprecate the random forest for the sake of image size
#76 opened Feb 2, 2021 by kdoroschak 1.0.0
@kdoroschak
Need to a better way to configure poretitioner?
#73 opened Dec 15, 2020 by kdoroschak 1.0.0
@thequicksort
Implement filter_like_existing fast5 file enhancement New feature or request "nice to have" Ideas that are "nice to haves" rather than "must haves"
#68 opened Oct 8, 2020 by kdoroschak
Parallelize filtering enhancement New feature or request
#67 opened Oct 3, 2020 by kdoroschak
Define modes for running poretitioner documentation Improvements or additions to documentation
#65 opened Oct 1, 2020 by kdoroschak 1.0.0
Validate configuration parameters before starting the pipeline (e.g. capture_f5_dir)
#64 opened Oct 1, 2020 by kdoroschak 1.0.0
Support developer installation on linux bug Something isn't working
#62 opened Sep 25, 2020 by kdoroschak 1.0.0
1
Create test data for arbitrary voltage flips
#61 opened Sep 25, 2020 by kdoroschak
3 tasks
1.0.0
1
Cache pytorch enhancement New feature or request
#58 opened May 1, 2020 by thequicksort
1 task
1
Use ONT style for reading/writing fast5 data
#55 opened Apr 30, 2020 by kdoroschak
Support CPU and GPU for pytorch
#41 opened Apr 27, 2020 by kdoroschak 1.0.0
Implement sklearn suggestions for model maintainability enhancement New feature or request
#38 opened Apr 27, 2020 by kdoroschak
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