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fix: add partial field to cdot json representation struct (#179) #400

fix: add partial field to cdot json representation struct (#179)

fix: add partial field to cdot json representation struct (#179) #400

Triggered via push June 28, 2024 10:45
Status Success
Total duration 3m 59s
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rust.yml

on: push
Matrix: Testing
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use of a fallible conversion when an infallible one could be used: src/parser/ds.rs#L497
warning: use of a fallible conversion when an infallible one could be used --> src/parser/ds.rs:497:18 | 497 | .try_into() | ^^^^^^^^ help: use: `into` | = note: converting `RnaInterval` to `Range<i32>` cannot fail = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#unnecessary_fallible_conversions
use of a fallible conversion when an infallible one could be used: src/parser/ds.rs#L490
warning: use of a fallible conversion when an infallible one could be used --> src/parser/ds.rs:490:18 | 490 | .try_into() | ^^^^^^^^ help: use: `into` | = note: converting `TxInterval` to `Range<i32>` cannot fail = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#unnecessary_fallible_conversions = note: `#[warn(clippy::unnecessary_fallible_conversions)]` on by default
usage of a legacy numeric constant: src/normalizer.rs#L849
warning: usage of a legacy numeric constant --> src/normalizer.rs:849:17 | 849 | std::i32::MAX | ^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants help: use the associated constant instead | 849 | i32::MAX |
usage of a legacy numeric constant: src/normalizer.rs#L360
warning: usage of a legacy numeric constant --> src/normalizer.rs:360:19 | 360 | Ok(0..std::i32::MAX) | ^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants help: use the associated constant instead | 360 | Ok(0..i32::MAX) | ~~~~~~~~
usage of a legacy numeric constant: src/normalizer.rs#L306
warning: usage of a legacy numeric constant --> src/normalizer.rs:306:26 | 306 | let _right = std::i32::MAX; | ^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants help: use the associated constant instead | 306 | let _right = i32::MAX; | ~~~~~~~~
usage of a legacy numeric constant: src/normalizer.rs#L302
warning: usage of a legacy numeric constant --> src/normalizer.rs:302:28 | 302 | exon_ends.push(std::i32::MAX); | ^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants help: use the associated constant instead | 302 | exon_ends.push(i32::MAX); | ~~~~~~~~
usage of a legacy numeric constant: src/data/cdot/json.rs#L858
warning: usage of a legacy numeric constant --> src/data/cdot/json.rs:858:34 | 858 | exon_aln_id: std::i32::MAX, | ^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants help: use the associated constant instead | 858 | exon_aln_id: i32::MAX, | ~~~~~~~~
usage of a legacy numeric constant: src/data/cdot/json.rs#L857
warning: usage of a legacy numeric constant --> src/data/cdot/json.rs:857:34 | 857 | alt_exon_id: std::i32::MAX, | ^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants help: use the associated constant instead | 857 | alt_exon_id: i32::MAX, | ~~~~~~~~
usage of a legacy numeric constant: src/data/cdot/json.rs#L856
warning: usage of a legacy numeric constant --> src/data/cdot/json.rs:856:33 | 856 | tx_exon_id: std::i32::MAX, | ^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants help: use the associated constant instead | 856 | tx_exon_id: i32::MAX, | ~~~~~~~~
usage of a legacy numeric constant: src/data/cdot/json.rs#L855
warning: usage of a legacy numeric constant --> src/data/cdot/json.rs:855:38 | 855 | alt_exon_set_id: std::i32::MAX, | ^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants help: use the associated constant instead | 855 | alt_exon_set_id: i32::MAX, | ~~~~~~~~
usage of a legacy numeric constant: src/data/cdot/json.rs#L854
warning: usage of a legacy numeric constant --> src/data/cdot/json.rs:854:37 | 854 | tx_exon_set_id: std::i32::MAX, | ^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants = note: `#[warn(clippy::legacy_numeric_constants)]` on by default help: use the associated constant instead | 854 | tx_exon_set_id: i32::MAX, | ~~~~~~~~
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Linting
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/clippy-check@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Testing (full)
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Testing (full)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Testing (full)
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Testing (full)
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Testing (full)
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Testing (full)
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Testing (full): src/mapper/variant.rs#L1762
fields `description` and `alternatives` are never read
Testing (full)
`hgvs` (lib test) generated 1 warning
Testing (fast)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions-rs/toolchain@v1, actions-rs/tarpaulin@v0.1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Testing (fast)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/tarpaulin@v0.1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Testing (fast)
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Testing (fast)
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Testing (fast)
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Testing (fast)
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