fix: add partial field to cdot json representation struct (#179) #400
rust.yml
on: push
Formatting
8s
Linting
49s
Matrix: Testing
Annotations
37 warnings
Formatting
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Formatting
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Formatting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Formatting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Formatting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Formatting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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use of a fallible conversion when an infallible one could be used:
src/parser/ds.rs#L497
warning: use of a fallible conversion when an infallible one could be used
--> src/parser/ds.rs:497:18
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497 | .try_into()
| ^^^^^^^^ help: use: `into`
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= note: converting `RnaInterval` to `Range<i32>` cannot fail
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#unnecessary_fallible_conversions
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use of a fallible conversion when an infallible one could be used:
src/parser/ds.rs#L490
warning: use of a fallible conversion when an infallible one could be used
--> src/parser/ds.rs:490:18
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490 | .try_into()
| ^^^^^^^^ help: use: `into`
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= note: converting `TxInterval` to `Range<i32>` cannot fail
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#unnecessary_fallible_conversions
= note: `#[warn(clippy::unnecessary_fallible_conversions)]` on by default
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usage of a legacy numeric constant:
src/normalizer.rs#L849
warning: usage of a legacy numeric constant
--> src/normalizer.rs:849:17
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849 | std::i32::MAX
| ^^^^^^^^^^^^^
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants
help: use the associated constant instead
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849 | i32::MAX
|
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usage of a legacy numeric constant:
src/normalizer.rs#L360
warning: usage of a legacy numeric constant
--> src/normalizer.rs:360:19
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360 | Ok(0..std::i32::MAX)
| ^^^^^^^^^^^^^
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= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants
help: use the associated constant instead
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360 | Ok(0..i32::MAX)
| ~~~~~~~~
|
usage of a legacy numeric constant:
src/normalizer.rs#L306
warning: usage of a legacy numeric constant
--> src/normalizer.rs:306:26
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306 | let _right = std::i32::MAX;
| ^^^^^^^^^^^^^
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants
help: use the associated constant instead
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306 | let _right = i32::MAX;
| ~~~~~~~~
|
usage of a legacy numeric constant:
src/normalizer.rs#L302
warning: usage of a legacy numeric constant
--> src/normalizer.rs:302:28
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302 | exon_ends.push(std::i32::MAX);
| ^^^^^^^^^^^^^
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants
help: use the associated constant instead
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302 | exon_ends.push(i32::MAX);
| ~~~~~~~~
|
usage of a legacy numeric constant:
src/data/cdot/json.rs#L858
warning: usage of a legacy numeric constant
--> src/data/cdot/json.rs:858:34
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858 | exon_aln_id: std::i32::MAX,
| ^^^^^^^^^^^^^
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants
help: use the associated constant instead
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858 | exon_aln_id: i32::MAX,
| ~~~~~~~~
|
usage of a legacy numeric constant:
src/data/cdot/json.rs#L857
warning: usage of a legacy numeric constant
--> src/data/cdot/json.rs:857:34
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857 | alt_exon_id: std::i32::MAX,
| ^^^^^^^^^^^^^
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants
help: use the associated constant instead
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857 | alt_exon_id: i32::MAX,
| ~~~~~~~~
|
usage of a legacy numeric constant:
src/data/cdot/json.rs#L856
warning: usage of a legacy numeric constant
--> src/data/cdot/json.rs:856:33
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856 | tx_exon_id: std::i32::MAX,
| ^^^^^^^^^^^^^
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants
help: use the associated constant instead
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856 | tx_exon_id: i32::MAX,
| ~~~~~~~~
|
usage of a legacy numeric constant:
src/data/cdot/json.rs#L855
warning: usage of a legacy numeric constant
--> src/data/cdot/json.rs:855:38
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855 | alt_exon_set_id: std::i32::MAX,
| ^^^^^^^^^^^^^
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants
help: use the associated constant instead
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855 | alt_exon_set_id: i32::MAX,
| ~~~~~~~~
|
usage of a legacy numeric constant:
src/data/cdot/json.rs#L854
warning: usage of a legacy numeric constant
--> src/data/cdot/json.rs:854:37
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854 | tx_exon_set_id: std::i32::MAX,
| ^^^^^^^^^^^^^
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#legacy_numeric_constants
= note: `#[warn(clippy::legacy_numeric_constants)]` on by default
help: use the associated constant instead
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854 | tx_exon_set_id: i32::MAX,
| ~~~~~~~~
|
Linting
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions-rs/toolchain@v1, actions-rs/clippy-check@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Linting
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/clippy-check@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Linting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Linting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Linting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Linting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing (full)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Testing (full)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Testing (full)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing (full)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing (full)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing (full)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing (full):
src/mapper/variant.rs#L1762
fields `description` and `alternatives` are never read
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Testing (full)
`hgvs` (lib test) generated 1 warning
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Testing (fast)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions-rs/toolchain@v1, actions-rs/tarpaulin@v0.1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
Testing (fast)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/tarpaulin@v0.1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
Testing (fast)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (fast)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (fast)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Testing (fast)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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