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recommended parameters when one chr has higher coverage than the others #128

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EHC2019 opened this issue Sep 9, 2023 · 1 comment
Open

recommended parameters when one chr has higher coverage than the others #128

EHC2019 opened this issue Sep 9, 2023 · 1 comment

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@EHC2019
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EHC2019 commented Sep 9, 2023

Hi,
What parameters should I control if I am looking for events SV when in the data one chromosomal element has much higher coverage than others (e.g mitochondria) . Thanks.
@walaj
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walaj commented Oct 13, 2023

you may want to set --max-reads to 0 to turn off read capping

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@walaj @EHC2019