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Acquisition and processing core-genome SNPs

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Extraction and processing core-genome SNPs

Yu Wan

Release: 14 Aug 2020; latest update: 11 Oct 2020.

Code in this repository is part of the GeneMates project. Please open individual subdirectories to see user manuals.

Citation

Wan, Y., Wick, R.R., Zobel, J., Ingle, D.J., Inouye, M., Holt, K.E. GeneMates: an R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure. BMC Genomics 21, 658 (2020). https://doi.org/10.1186/s12864-020-07019-6.

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