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  1. liger liger Public

    R package for integrating and analyzing multiple single-cell datasets

    R 406 79

  2. MultiVelo MultiVelo Public

    Multi-omic velocity inference

    Python 109 11

  3. VeloVAE VeloVAE Public

    Deep Generative Modeling of RNA Velocity

    Jupyter Notebook 35 6

  4. PerturbNet PerturbNet Public

    PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation

    Jupyter Notebook 30 10

  5. pyliger pyliger Public

    Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)

    Jupyter Notebook 29 5

  6. SquiggleNet SquiggleNet Public

    Python 20 5

Repositories

Showing 10 of 29 repositories
  • RcppPlanc Public
    welch-lab/RcppPlanc’s past year of commit activity
    C++ 4 GPL-2.0 1 1 0 Updated Mar 6, 2025
  • libplanc Public Forked from ramkikannan/planc

    Distributed NMF/NTF Library

    welch-lab/libplanc’s past year of commit activity
    C++ 1 19 0 0 Updated Mar 6, 2025
  • pyliger Public

    Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)

    welch-lab/pyliger’s past year of commit activity
    Jupyter Notebook 29 GPL-3.0 5 9 0 Updated Mar 5, 2025
  • MultiVeloVAE Public
    welch-lab/MultiVeloVAE’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Mar 4, 2025
  • TopoVelo Public
    welch-lab/TopoVelo’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Feb 28, 2025
  • VeloVAE Public

    Deep Generative Modeling of RNA Velocity

    welch-lab/VeloVAE’s past year of commit activity
    Jupyter Notebook 35 BSD-3-Clause 6 7 0 Updated Feb 25, 2025
  • cytosignal Public
    welch-lab/cytosignal’s past year of commit activity
    R 16 1 2 0 Updated Feb 20, 2025
  • welch-lab.github.io Public Forked from vittala23/welchlab

    Welch Lab

    welch-lab/welch-lab.github.io’s past year of commit activity
    HTML 1 1,217 0 0 Updated Feb 17, 2025
  • PerturbNet Public

    PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation

    welch-lab/PerturbNet’s past year of commit activity
    Jupyter Notebook 30 GPL-3.0 10 2 1 Updated Feb 7, 2025
  • LUMIC Public
    welch-lab/LUMIC’s past year of commit activity
    Python 0 0 0 0 Updated Feb 5, 2025

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