TypeError when calling genbank_get_genomes_by_taxon.py

[jvollme]

Summary:

When calling genbank_get_genomes_by_taxon.py with the --retries argument, I get a TypeError, because the argument is stored as a string, but evaluated as an integer.

I guess could be most easily fixed if all Integer arguments (--retries, --batchsize and --timeout) would be explicitely set as "type = int" during the respective argparse parser.add_argument() calls.

[widdowquinn]

You're correct. That's a hole in my testing (script inputs) that I've now got some cover for in the new version. Thank you for spotting it - I'll get it sorted and push out a new version.

[widdowquinn]

This issue should be fixed with commit 69503d3, and I've pushed a new version (v0.2.7) to PyPI and Docker so you should be able to get those with a pip install or docker run.

This should fix the issue, but please do raise another if you find any other problems.

L.