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@wtsi-hgi

Wellcome Trust Sanger Institute - Human Genetics Informatics

Analysing genomic data at scale for the Human Genetics Program

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  1. ibackup ibackup Public

    Performant backups of many files to iRODS

    Go

  2. softpack-web softpack-web Public

    Softpack Web provides a graphical user interface for Softpack services.

    TypeScript

  3. softpack-core softpack-core Public

    SoftPack Core

    Python

  4. go-softpack-builder go-softpack-builder Public

    Go implementation of a softpack builder service

    Go

  5. QTLight QTLight Public

    eqtl analysis pipeline using tensorqtl, saige-qtl and LIMIX

    Python 7 5

  6. yascp yascp Public

    scRNA multimodal analysis pipeline utilised for large dataset processing

    Python 14 7

Repositories

Showing 10 of 410 repositories
  • ibackup Public

    Performant backups of many files to iRODS

    wtsi-hgi/ibackup’s past year of commit activity
    Go 0 MIT 0 0 2 Updated Feb 24, 2025
  • wes-qc Public

    Sample and variant QC for exome cohort studies

    wtsi-hgi/wes-qc’s past year of commit activity
    Python 2 0 0 1 Updated Feb 24, 2025
  • QTLight Public

    eqtl analysis pipeline using tensorqtl, saige-qtl and LIMIX

    wtsi-hgi/QTLight’s past year of commit activity
    Python 7 GPL-3.0 5 0 0 Updated Feb 24, 2025
  • wrstat-ui Public
    wtsi-hgi/wrstat-ui’s past year of commit activity
    Go 0 MIT 0 0 3 Updated Feb 21, 2025
  • admixture-from-glimpse Public

    Run admixture on GLIMPSE imputed genotypes to predict sample populations

    wtsi-hgi/admixture-from-glimpse’s past year of commit activity
    Nextflow 0 0 0 0 Updated Feb 21, 2025
  • nf_irods_to_lustre Public

    Fetch Cram files and/or Cellranger data from Sanger Irods to /lustre

    wtsi-hgi/nf_irods_to_lustre’s past year of commit activity
    Python 0 GPL-3.0 3 0 1 Updated Feb 21, 2025
  • spack-repo Public

    Spack Package Repository

    wtsi-hgi/spack-repo’s past year of commit activity
    Python 3 MIT 3 0 0 Updated Feb 20, 2025
  • farmers-report Public

    Weekly report for farm usage

    wtsi-hgi/farmers-report’s past year of commit activity
    R 0 0 0 1 Updated Feb 11, 2025
  • nf_splicing Public

    a pipeline for splicing analysis using short reads

    wtsi-hgi/nf_splicing’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Feb 5, 2025
  • tt Public

    Manage temporary things

    wtsi-hgi/tt’s past year of commit activity
    Go 0 MIT 0 0 0 Updated Feb 3, 2025
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