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Collect and process statistics from aligned linked-reads.

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Name		Name	Last commit message	Last commit date
Latest commit History 43 Commits
.github/workflows		.github/workflows
LinkStats		LinkStats
_LinkStats_C		_LinkStats_C
LICENSE		LICENSE
README.md		README.md
setup.py		setup.py
version		version

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LinkStats

Collect and process statistics from aligned linked-reads.

Bioconda

LinkStats is available on bioconda.

> conda install linkstats

Usage

LinkStats --help

Requirments, Running

htslib >=1.12
python >=3.8
- click >=8.0.1
- pandas >=1.2.5
- numpy >=1.20.3
- seaborn >=0.11.1
- matplotlib >=3.4.2
- tqdm >=4.61.1

Requirments, Installing

meson
C++ compiler (tested with clang 11)
setuptools
git

cd LinkStats
python setup.py install

Third-Party Acknowledgements

stb_sprintf.h

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Collect and process statistics from aligned linked-reads.

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LinkStats-0.1.3 Latest

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