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A Size and Positional Analysis (SPA) tool for studying chromothripsis breakages.

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chromoSPA

A Statistical Tool for studying chromothripsis

The purpose of this tool is to provide some basic statistical diagnostics for a given chromothripsis event, based on very simple spatial position and size information. From this information it is possible to infer properties of the mechanisms which cause chromothripsis.

Cloning

Note that the /libs directory contains a submodule to an external library (written by me). To recover all required source code, you must use the --recurse-submodules command whilst cloning.

Compiling & Running

Requires C++17 or higher.

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A Size and Positional Analysis (SPA) tool for studying chromothripsis breakages.

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