Skip to content
New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

#

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

Jump to bottom

Record makeblastdb errors for debugging purposes #683

Merged
merged 2 commits into from
Sep 29, 2023
Merged

Record makeblastdb errors for debugging purposes #683

merged 2 commits into from
Sep 29, 2023

Commits on Sep 27, 2023

  1. Convert spec/makeblastdb_spec.rb from deprecated Rspec syntax

    @tadast
    tadast committed Sep 27, 2023
    Configuration menu
    Copy the full SHA
    65cf512 View commit details
    Browse the repository at this point in the history

Commits on Sep 29, 2023

  1. Record makeblastdb errors for debugging purposes 

    formatting databases seems to be happening in a forked process,
so printing the stderr does not seem to have the desired effect
to aid the debugging. The shellou utility already has a way to
store stderr as a separate file, so save it next to the dababase or
database directory that was being formatted when the error occured.
    @tadast
    tadast committed Sep 29, 2023
    Configuration menu
    Copy the full SHA
    10ecaad View commit details
    Browse the repository at this point in the history