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1. NeuronMotif NeuronMotif Public

   NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks

   Python 9 5

2. esATAC esATAC Public

   Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis

   R 23 11

3. pipeFrame pipeFrame Public

   Bioconductor/R package pipeFrame: Pipeline framework for bioinformatics in R

   R 1 2

4. Rbowtie2 Rbowtie2 Public

   Bioconductor package: an R wrapper for Bowtie2 and AdapterRemoval

   C++ 3 4