.gitignore

# JetBrains products, including PyCharm
.idea/
# MacOs files
.DS_Store

server.bak/
venv/
**/*.bak
\#*\#
**~
# CSV files generated by source and generation framework scripts.
# These files are large.
# In addition, the CSV files built from UMLS data contain data licensed by UMLS.
neo4j/import*
# logs from the generation framework
generation_framework/builds/logs/*.log
generation_framework/resources/
# binary dependencies of PheKnowLator
generation_framework/pkt_kg/
# files in OWLNETS format generated by PheKnowLator
generation_framework/owlnets_output*
# OWL files downloaded by PheKnowLator from online sources
generation_framework/owl
generation_framework/venv
generation_framework/.python-version
generation_framework/robot

# configuration files
generation_framework/gencode/*.ini
generation_framework/skowlnets/*.ini
generation_framework/ubkg_edges_nodes/*.ini
generation_framework/uniprotkb/*.ini
generation_framework/hmfields/*.ini

# log files in any path
**/*.log

api/*

# Jupyter
.ipynb_checkpoints