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msigdb_decomp

Different NMF algorithms:

  • additive_NMF.py : updates based on gradient descent for a generalized cost function for NMF
    • can change parameters controlling degree of orthogonality
  • master_SNMF.py: multiplicative updates for NMF
    • majority are some variant of semi-orthogonal W or semi-orthogonal H

Helper functions:

  • xavier_scripts.py: useful helper function for notebooks

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