rename LD_matrix and SNP_info to LD_file and SNP_file

xinhe-lab · Jul 23, 2024 · e9c53df · e9c53df
1 parent 43df926
commit e9c53df
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/development/ctwas_LDL_liver_tutorial_sample_data_LD.R b/development/ctwas_LDL_liver_tutorial_sample_data_LD.R
@@ -35,8 +35,8 @@ if (file.exists(region_info_file) && file.exists(snp_map_file) && file.exists(LD
   filestem <- paste0("ukb_b38_0.1")
   ld_filestem <- sprintf("%s_chr%s.R_snp.%s_%s", filestem,
                          region_metatable$chrom, region_metatable$start, region_metatable$stop)
-  region_metatable$LD_matrix <- file.path(ld_R_dir, paste0(ld_filestem, ".RDS"))
-  region_metatable$SNP_info <- file.path(ld_R_dir, paste0(ld_filestem, ".Rvar"))
+  region_metatable$LD_file <- file.path(ld_R_dir, paste0(ld_filestem, ".RDS"))
+  region_metatable$SNP_file <- file.path(ld_R_dir, paste0(ld_filestem, ".Rvar"))
   res <- create_snp_LD_map(region_metatable)
   region_info <- res$region_info
   snp_map <- res$snp_map