An assortment of methods for bam|sam|cram files
htslib installed
- Clone the repository.
- Add the root HTSLIB path to the Makefile i.e.:
HTSROOT=/net/eichler/vol8/home/zevk/tools/htslib/
- Run the make command.
This program adds four additional optional tags to the bam file.
| tag | type | definition |
|---|---|---|
| XB | I (uint32_t) | The beginning of the alignment |
| XE | I (uint32_t) | The end of the alignment |
| XP | f (float) | The percent identity of the alignment (length - NM - clipping) |
| XL | I (Uint32_t) | The length of the alignment block |