SNPRelate for organelle genome (mitochondria or chloroplast)

[ucabuk]

Hi,

I am working on variant analysis of organelle genome but I could not make sure If I use my output files in SNPRelate for this purporse. Because method parameter in "snpgdsVCF2GDS_R" function is called as "biallelic_only". I am a bit confused. Do you have any recommendations to use SNPRelate for this purporse ? OR what kind of a way should I follow using SNPRelate ?

[zhengxwen]

Please use the SeqArray package instead.

[ucabuk]

Hi Xiuwen,

Thank you for your suggestion. I will try it.