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Error when converting vcf to gds #96

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AmanahLW opened this issue Aug 23, 2022 · 2 comments
Open

Error when converting vcf to gds #96

AmanahLW opened this issue Aug 23, 2022 · 2 comments

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@AmanahLW
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AmanahLW commented Aug 23, 2022 •
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I'm starting to get an error when running seqVCF2GDS function to covert BCFTools, Strelka2 and GATK uncompressed VCF to GDS.
The code i'm using:
gatkgds<-seqVCF2GDS(gatk.fn, "samples50_gatk_WT.gds", parallel = 17 , storage.option="LZMA_RA")

Error in seqOpen(fn, allow.duplicate = TRUE) :
The number of compression blocks should be defined.
@AmanahLW
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Sorry, this issue should have been posted on seqarray repo.

@zhengxwen
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Please use a single core:
parallel = 1

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@zhengxwen @AmanahLW