Trouble converting GDS2BED

[clorenzo1]

Hi there,

I am trying to use GDS2BED on a vcf file produced by DiscoSnpRad.

The code I am using is:

snpgdsGDS2BED(genofile, bed.fn = "test")

I have successful done this in the past, but am now getting an error that says:

Converting from GDS to PLINK binary PED:
Working space: 717 samples, 2719 SNPs
Error in if ((opt$autosome.start == 1) & (opt$autosome.end == 22)) { :
missing value where TRUE/FALSE needed

Do you know why this could be?

Best,
Coral