Merge pull request usgs-coupled#13 from usgs-coupled/run_errors

Fixed run errors
dlparkhurst · Jun 22, 2024 · 83c0d71 · 83c0d71
2 parents 1b276df + e1c5daf
commit 83c0d71
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Showing 5 changed files with 54 additions and 59 deletions.
diff --git a/examples/CMakeLists.txt b/examples/CMakeLists.txt
@@ -440,6 +440,7 @@ set(example_welldir ${EXAMPLES_DIR}/well)
 
 set(well
 well/phast.dat
+well/well.chem.dat
 well/well.trans.dat
 )
 

diff --git a/examples/Makefile.am b/examples/Makefile.am
@@ -407,6 +407,7 @@ dist_example_well_DATA = $(well)
 
 well= \
      well/phast.dat \
+	 well/well.chem.dat \
      well/well.trans.dat
 
 

diff --git a/examples/ex5/ex5.trans.dat b/examples/ex5/ex5.trans.dat
@@ -216,7 +216,7 @@ DRAIN 5 West Boundary Coonamessett River
 ZONE_FLOW 1
         -box 276400 811000 -200 281300 822300 20
                 -description Plume submodel
-                -write_heads_xyzt     plume.heads.xyzt
+                -write_heads_xyzt     plume
 HEAD_IC
         -domain 
                 #----- Use the following line for EXAMPLE 5A, steady state simulation

diff --git a/examples/ex6/ex6.trans.dat b/examples/ex6/ex6.trans.dat
@@ -27,24 +27,10 @@ UNITS
         -drain_thickness              m
         -drain_width                  m
 GRID
-        # 100 m grid
-        -uniform X 276400 281300  50  # 100 m grid
-        -uniform Y 811000 822300 114  # 100 m grid
-        -uniform Z -120   20      15  # 10  m grid
-#        # 50 m grid
-#        -uniform X 276400 281300  99  # 50 m grid
-#        -uniform Y 811000 822300 227  # 50 m grid
-#        -uniform Z -120   20      29  # 5  m grid
-#        # modified 25 m grid
-#        -uniform X 276400 281300  99  # 50 m grid
-#        -uniform Y 811000 822300 227  # 50 m grid
-#        -overlay_uniform X 277100 280300 129 # 25 m
-#        -overlay_uniform Y 813000 822000 361 # 25 m
-#        -uniform Z -120   20     57   # 2.5  m grid
-#        # true 25 m grid
-#        -uniform X 276400 281300 197  # 25 m grid
-#        -uniform Y 811000 822300 453  # 25 m grid
-#        -uniform Z -120   20     57   # 2.5  m grid
+
+        -uniform X 275000 285000  51         # 200 m grid
+        -uniform Y 810000 830000 101         # 200 m grid
+        -uniform Z -120   20      15         # 10  m grid        
         -snap   X                     0.001
         -snap   Y                     0.001
         -snap   Z                     0.001
@@ -55,7 +41,6 @@ GRID
 MEDIA
         # Default is inactive
         -domain
-        #-box 275000 810000 -200 285000 830000 50 MAP
                 -active               0
                 -porosity             0.39
                 -specific_storage     0.39 
@@ -77,20 +62,14 @@ MEDIA
                 -bottom    CONSTANT   GRID   0
                 -active                      1
         -prism
-                -description Plume submodel outline
-                -perimeter POINTS GRID 
-                        281100.   822300.    -200
-                        281100.   821100.    -200
-                        280500.   819000.    -200
-                        280000    817400.    -200
-                        279900.   816300.    -200
-                        279700.   814100.    -200
-                        279500.   811400.    -200
-                        279500.   809400.    -200        
-                        285000.   809400.    -200
-                        285000.   822300.    -200
-                        end_points        
-                -active                      0
+                -top       CONSTANT   GRID   20
+                -bottom    SHAPE      GRID   ../ex5/ArcData/SimpleBath.shp 10
+                -perimeter SHAPE      GRID   ../ex5/ArcData/SimplePonds.shp
+                -Kx                   30000
+                -Ky                   30000
+                -Kz                   30000
+                -porosity             1
+                -specific_storage     1
 FLUX_BC
         -prism
                 -description Rainfall
@@ -174,27 +153,43 @@ SPECIFIED_HEAD_BC
                         0             0.0
                 -associated_solution
                         0             1                        
-        -box 275000 822300 -200 285000 822300 20 MAP
-                -description Constant head at north end of sub region
-                -head   
-                        0  XYZT       GRID   ../ex5/plume.heads.xyzt
-                -associated_solution
-                        0             1                        
-        -box 279500 815300 -50 285000 822300 20 MAP
-                -description Constant head on part of east edge of sub region
-                -exterior_cells_only  X
-                -head        
-                        0  XYZT       GRID   ../ex5/plume.heads.xyzt
-                -associated_solution
-                        0             1
-        -prism
-                -description Constant head for ponds
-                -bottom    SHAPE      GRID   ../ex5/ArcData/SimpleBath.shp 10
-                -perimeter SHAPE      GRID   ../ex5/ArcData/SimplePonds.shp
-                -head        
-                        0  XYZT       GRID   ../ex5/plume.heads.xyzt
-                -associated_solution
-                        0             1
+
+DRAIN 1 East Boundary Quashnet R
+        -point  282107.6   820940.0
+                -width                20
+                -bed_hydraulic        10.00
+                -bed_thickness        1
+                -z                    11.83
+        -point  282487.8    821288.7
+        -point  282757.6    821288.7
+        -point  282919.5    820702.8
+        -point  283205.1    819653.4
+        -point  283300.6    818796.2
+        -point  283204.1    818082.7
+        -point  283164.3    817427.9
+        -point  282915.4    816494.7
+        -point  282209.6    814714.3
+                -width                20
+                -bed_hydraulic        10.00
+                -bed_thickness        1
+                -z                    0
+DRAIN 2 Childs River, Johns Pond drain
+        -point 281619.9    818867.5
+                -width                20
+                -bed_hydraulic        10.00
+                -bed_thickness        1
+                -z                    10.56
+        -point  281589.3    818251.7
+        -point  281488.0    817897.2
+        -point  281342.9    817343.9
+        -point  281272.3    816543.5
+        -point  281319.4    816213.9
+        -point  281211.6    815490.0
+        -point  280897.2    814875.9
+                -width                20
+                -bed_hydraulic        10.00
+                -bed_thickness        1
+                -z                    0
 DRAIN 3 Bourne River
         -point  279187.9    815453.3
                 -width                20

diff --git a/examples/linear_ic/linear_ic.chem.dat b/examples/linear_ic/linear_ic.chem.dat
@@ -1,5 +1,6 @@
 KNOBS
-        -convergence_tol 1e-12
+		-step 10
+		-pe   2
 SURFACE_MASTER_SPECIES
         Surf  SurfOH
 SURFACE_SPECIES
@@ -81,9 +82,7 @@ KINETICS 1
                 -m0 2
                 -m  1
                 -parms 6800 0.1 # 1.36e4  0.1
-                -tol 1e-12
         Pyrite  
-                -tol    1e-6
                 -m0     2
                 -m      1
                 -parms -5.3     0.1     .5      -0.11 
@@ -92,7 +91,6 @@ KINETICS 2
                 -m0 4
                 -m  2
                 -parms 6800  0.1
-                -tol 1e-12
 END     
 SELECTED_OUTPUT
         -file linear_ic.sel
-Original file line number
+Diff line change
@@ Expand Up / @@ -407,6 +407,7 @@ dist_example_well_DATA = $(well) @@
     well= \
          well/phast.dat \
+    	 well/well.chem.dat \
          well/well.trans.dat
@@ Expand Down @@