docs: link to replacements of deprecated functions

R/adjacency.R

@@ -3,7 +3,7 @@
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `graph.adjacency()` was renamed to `graph_from_adjacency_matrix()` to create a more
+#' `graph.adjacency()` was renamed to [graph_from_adjacency_matrix()] to create a more
 #' consistent API.
 #' @inheritParams graph_from_adjacency_matrix
 #' @keywords internal

R/assortativity.R

@@ -3,7 +3,7 @@
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `assortativity.nominal()` was renamed to `assortativity_nominal()` to create a more
+#' `assortativity.nominal()` was renamed to [assortativity_nominal()] to create a more
 #' consistent API.
 #' @inheritParams assortativity_nominal
 #' @keywords internal
@@ -18,7 +18,7 @@ assortativity.nominal <- function(graph, types, directed = TRUE, normalized = TR
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `assortativity.degree()` was renamed to `assortativity_degree()` to create a more
+#' `assortativity.degree()` was renamed to [assortativity_degree()] to create a more
 #' consistent API.
 #' @inheritParams assortativity_degree
 #' @keywords internal

R/attributes.R

@@ -3,7 +3,7 @@
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `set.vertex.attribute()` was renamed to `set_vertex_attr()` to create a more
+#' `set.vertex.attribute()` was renamed to [set_vertex_attr()] to create a more
 #' consistent API.
 #' @inheritParams set_vertex_attr
 #' @keywords internal
@@ -23,7 +23,7 @@ set.vertex.attribute <- function(graph, name, index = V(graph), value) {
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `set.graph.attribute()` was renamed to `set_graph_attr()` to create a more
+#' `set.graph.attribute()` was renamed to [set_graph_attr()] to create a more
 #' consistent API.
 #' @inheritParams set_graph_attr
 #' @keywords internal
@@ -43,7 +43,7 @@ set.graph.attribute <- function(graph, name, value) {
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `set.edge.attribute()` was renamed to `set_edge_attr()` to create a more
+#' `set.edge.attribute()` was renamed to [set_edge_attr()] to create a more
 #' consistent API.
 #' @inheritParams set_edge_attr
 #' @keywords internal
@@ -59,7 +59,7 @@ set.edge.attribute <- function(graph, name, index = E(graph), value) {
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `remove.vertex.attribute()` was renamed to `delete_vertex_attr()` to create a more
+#' `remove.vertex.attribute()` was renamed to [delete_vertex_attr()] to create a more
 #' consistent API.
 #' @inheritParams delete_vertex_attr
 #' @keywords internal
@@ -79,7 +79,7 @@ remove.vertex.attribute <- function(graph, name) {
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `remove.graph.attribute()` was renamed to `delete_graph_attr()` to create a more
+#' `remove.graph.attribute()` was renamed to [delete_graph_attr()] to create a more
 #' consistent API.
 #' @inheritParams delete_graph_attr
 #' @keywords internal
@@ -99,7 +99,7 @@ remove.graph.attribute <- function(graph, name) {
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `remove.edge.attribute()` was renamed to `delete_edge_attr()` to create a more
+#' `remove.edge.attribute()` was renamed to [delete_edge_attr()] to create a more
 #' consistent API.
 #' @inheritParams delete_edge_attr
 #' @keywords internal
@@ -119,7 +119,7 @@ remove.edge.attribute <- function(graph, name) {
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `list.vertex.attributes()` was renamed to `vertex_attr_names()` to create a more
+#' `list.vertex.attributes()` was renamed to [vertex_attr_names()] to create a more
 #' consistent API.
 #' @inheritParams vertex_attr_names
 #' @keywords internal
@@ -139,7 +139,7 @@ list.vertex.attributes <- function(graph) {
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `list.graph.attributes()` was renamed to `graph_attr_names()` to create a more
+#' `list.graph.attributes()` was renamed to [graph_attr_names()] to create a more
 #' consistent API.
 #' @inheritParams graph_attr_names
 #' @keywords internal
@@ -159,7 +159,7 @@ list.graph.attributes <- function(graph) {
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `list.edge.attributes()` was renamed to `edge_attr_names()` to create a more
+#' `list.edge.attributes()` was renamed to [edge_attr_names()] to create a more
 #' consistent API.
 #' @inheritParams edge_attr_names
 #' @keywords internal
@@ -179,7 +179,7 @@ list.edge.attributes <- function(graph) {
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `is.weighted()` was renamed to `is_weighted()` to create a more
+#' `is.weighted()` was renamed to [is_weighted()] to create a more
 #' consistent API.
 #' @inheritParams is_weighted
 #' @keywords internal
@@ -195,7 +195,7 @@ is.weighted <- function(graph) {
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `is.named()` was renamed to `is_named()` to create a more
+#' `is.named()` was renamed to [is_named()] to create a more
 #' consistent API.
 #' @inheritParams is_named
 #' @keywords internal
@@ -211,7 +211,7 @@ is.named <- function(graph) {
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `is.bipartite()` was renamed to `is_bipartite()` to create a more
+#' `is.bipartite()` was renamed to [is_bipartite()] to create a more
 #' consistent API.
 #' @inheritParams is_bipartite
 #' @keywords internal
@@ -227,7 +227,7 @@ is.bipartite <- function(graph) {
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `get.vertex.attribute()` was renamed to `vertex_attr()` to create a more
+#' `get.vertex.attribute()` was renamed to [vertex_attr()] to create a more
 #' consistent API.
 #' @inheritParams vertex_attr
 #' @keywords internal
@@ -243,7 +243,7 @@ get.vertex.attribute <- function(graph, name, index = V(graph)) {
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `get.graph.attribute()` was renamed to `graph_attr()` to create a more
+#' `get.graph.attribute()` was renamed to [graph_attr()] to create a more
 #' consistent API.
 #' @inheritParams graph_attr
 #' @keywords internal
@@ -259,7 +259,7 @@ get.graph.attribute <- function(graph, name) {
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `get.edge.attribute()` was renamed to `edge_attr()` to create a more
+#' `get.edge.attribute()` was renamed to [edge_attr()] to create a more
 #' consistent API.
 #' @inheritParams edge_attr
 #' @keywords internal

R/basic.R

@@ -3,7 +3,7 @@
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `is.igraph()` was renamed to `is_igraph()` to create a more
+#' `is.igraph()` was renamed to [is_igraph()] to create a more
 #' consistent API.
 #' @inheritParams is_igraph
 #' @keywords internal

R/bipartite.R

@@ -3,7 +3,7 @@
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `bipartite.projection.size()` was renamed to `bipartite_projection_size()` to create a more
+#' `bipartite.projection.size()` was renamed to [bipartite_projection_size()] to create a more
 #' consistent API.
 #' @inheritParams bipartite_projection_size
 #' @keywords internal
@@ -18,7 +18,7 @@ bipartite.projection.size <- function(graph, types = NULL) { # nocov start
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `bipartite.projection()` was renamed to `bipartite_projection()` to create a more
+#' `bipartite.projection()` was renamed to [bipartite_projection()] to create a more
 #' consistent API.
 #' @inheritParams bipartite_projection
 #' @keywords internal
@@ -33,7 +33,7 @@ bipartite.projection <- function(graph, types = NULL, multiplicity = TRUE, probe
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `bipartite.mapping()` was renamed to `bipartite_mapping()` to create a more
+#' `bipartite.mapping()` was renamed to [bipartite_mapping()] to create a more
 #' consistent API.
 #' @inheritParams bipartite_mapping
 #' @keywords internal

R/centrality.R

@@ -3,7 +3,7 @@
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `subgraph.centrality()` was renamed to `subgraph_centrality()` to create a more
+#' `subgraph.centrality()` was renamed to [subgraph_centrality()] to create a more
 #' consistent API.
 #' @inheritParams subgraph_centrality
 #' @keywords internal
@@ -18,7 +18,7 @@ subgraph.centrality <- function(graph, diag = FALSE) { # nocov start
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `page.rank()` was renamed to `page_rank()` to create a more
+#' `page.rank()` was renamed to [page_rank()] to create a more
 #' consistent API.
 #' @inheritParams page_rank
 #' @keywords internal
@@ -33,7 +33,7 @@ page.rank <- function(graph, algo = c("prpack", "arpack"), vids = V(graph), dire
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `hub.score()` was renamed to `hub_score()` to create a more
+#' `hub.score()` was renamed to [hub_score()] to create a more
 #' consistent API.
 #' @inheritParams hub_score
 #' @keywords internal
@@ -48,7 +48,7 @@ hub.score <- function(graph, scale = TRUE, weights = NULL, options = arpack_defa
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `authority.score()` was renamed to `authority_score()` to create a more
+#' `authority.score()` was renamed to [authority_score()] to create a more
 #' consistent API.
 #' @inheritParams authority_score
 #' @keywords internal
@@ -63,7 +63,7 @@ authority.score <- function(graph, scale = TRUE, weights = NULL, options = arpac
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `graph.strength()` was renamed to `strength()` to create a more
+#' `graph.strength()` was renamed to [strength()] to create a more
 #' consistent API.
 #' @inheritParams strength
 #' @keywords internal
@@ -78,7 +78,7 @@ graph.strength <- function(graph, vids = V(graph), mode = c("all", "out", "in",
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `graph.eigen()` was renamed to `spectrum()` to create a more
+#' `graph.eigen()` was renamed to [spectrum()] to create a more
 #' consistent API.
 #' @inheritParams spectrum
 #' @keywords internal
@@ -93,7 +93,7 @@ graph.eigen <- function(graph, algorithm = c("arpack", "auto", "lapack", "comp_a
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `graph.diversity()` was renamed to `diversity()` to create a more
+#' `graph.diversity()` was renamed to [diversity()] to create a more
 #' consistent API.
 #' @inheritParams diversity
 #' @keywords internal
@@ -108,7 +108,7 @@ graph.diversity <- function(graph, weights = NULL, vids = V(graph)) { # nocov st
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `evcent()` was renamed to `eigen_centrality()` to create a more
+#' `evcent()` was renamed to [eigen_centrality()] to create a more
 #' consistent API.
 #' @inheritParams eigen_centrality
 #' @keywords internal
@@ -123,7 +123,7 @@ evcent <- function(graph, directed = FALSE, scale = TRUE, weights = NULL, option
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `edge.betweenness()` was renamed to `edge_betweenness()` to create a more
+#' `edge.betweenness()` was renamed to [edge_betweenness()] to create a more
 #' consistent API.
 #' @inheritParams edge_betweenness
 #' @keywords internal
@@ -138,7 +138,7 @@ edge.betweenness <- function(graph, e = E(graph), directed = TRUE, weights = NUL
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `bonpow()` was renamed to `power_centrality()` to create a more
+#' `bonpow()` was renamed to [power_centrality()] to create a more
 #' consistent API.
 #' @inheritParams power_centrality
 #' @keywords internal
@@ -153,7 +153,7 @@ bonpow <- function(graph, nodes = V(graph), loops = FALSE, exponent = 1, rescale
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' `alpha.centrality()` was renamed to `alpha_centrality()` to create a more
+#' `alpha.centrality()` was renamed to [alpha_centrality()] to create a more
 #' consistent API.
 #' @inheritParams alpha_centrality
 #' @keywords internal
@@ -188,7 +188,7 @@ alpha.centrality <- function(graph, nodes = V(graph), alpha = 1, loops = FALSE,
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' Use [`betweenness()`] with the `cutoff` argument instead.
+#' Use [betweenness()] with the `cutoff` argument instead.
 #' @param vids The vertices for which the vertex betweenness estimation will be
 #'   calculated.
 #' @inheritParams betweenness
@@ -351,7 +351,7 @@ edge_betweenness <- function(graph, e = E(graph),
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' Use [`edge_betweenness()`] with the `cutoff` argument instead.
+#' Use [edge_betweenness()] with the `cutoff` argument instead.
 #' @inheritParams edge_betweenness
 #' @keywords internal
 #' @export
@@ -467,7 +467,7 @@ closeness <- function(graph, vids = V(graph),
 #' @description
 #' `r lifecycle::badge("deprecated")`
 #'
-#' Use [`closeness()`] with the `cutoff` argument instead.
+#' Use [closeness()] with the `cutoff` argument instead.
 #' @inheritParams closeness
 #' @keywords internal
 #' @export