Version 1.23

Add tool to compare the state of filters between two VCFs

Version 1.22

This is another minor update to TagPcrSummary, which allows the user to supply custom strings on the command-line, which are used to identify reads with non-integrated vector.

Version 1.21

This is an update to TagPcrSummary, allowing the tool to support separate YAML files, which describe the insert/transgene

Version 1.20

This is a minor update to Immunogenotyper that adds more informative logging.

Version 1.19

This release is a minor updated to TagPcrSummary, correcting a bug that could allow some alignments to be inappropriately skipped.

Version 1.18

This release contains updated to TagPcrSummary, allowing more flexible definitions for insert types.

Version 1.17

This contains a series of bugfixes and improvements to TagPcrSummary, making the output of flanking genomics regions and validation primer design more robust.

Version 1.16

This is a minor update that includes a bugfix to ClipOverlappingAlignments. When the end clip position would land in a read deletion, the clip position is now shifted to immediately prior to that deletion.

Version 1.15

This is a minor update to TagPcrSummary, which allows this tool to execute without designing primers.

Version 1.14

Adds ClipOverlappingAlignments, a tool to soft-clip alignments based on a BED file (such as primer binding sites).