update clearance, namingç_convention

InSilicoVida-Research-Lab · Oct 9, 2024 · 5be4ab6 · 5be4ab6
1 parent 485db09
commit 5be4ab6
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diff --git a/Robot/annotations/annotation.ttl b/Robot/annotations/annotation.ttl
@@ -30,6 +30,6 @@
 
         ;
     dcterms:created "2024-08-11"^^xsd:date ;
-    dcterms:modified "2024-08-11"^^xsd:date ;
+    dcterms:modified "2024-10-09"^^xsd:date ;
     owl:versionInfo "1.0" ;
     rdfs:label "PBPK Ontology" .
diff --git a/Robot/command.txt b/Robot/command.txt
@@ -1,5 +1,14 @@
+## Check Robot version
 docker run -v ${PWD}:/work -w /work -e 'ROBOT_JAVA_ARGS=' -e 'JAVA_OPTS=' --rm -ti obolibrary/robot robot --version
 
+## Adding properties
+docker run -v ${PWD}:/work -w /work -e 'ROBOT_JAVA_ARGS=' -e 'JAVA_OPTS=' --rm -ti obolibrary/robot robot template  --template /work/templates/properties.tsv --merge-before --input /work/ontologies/pbpko.owl --add-prefixes /work/config/context.json  --output /work/ontologies/pbpko-rel.owl 
+
+## Merge imported modules to the main ontology using template command
+docker run -v ${PWD}:/work -w /work -e 'ROBOT_JAVA_ARGS=' -e 'JAVA_OPTS=' --rm -ti obolibrary/robot robot template --merge-before --input /work/ontologies/imported_modules.owl --template /work/templates/vocab.tsv --prefix "pbpko:http://purl.obolibrary.org/obo/" --output /work/ontologies/merged.owl
+
+## Imported ontology
+docker run -v ${PWD}:/work -w /work -e 'ROBOT_JAVA_ARGS=' -e 'JAVA_OPTS=' --rm -ti obolibrary/robot robot template --template /work/templates/annotations.tsv --prefix "iao:http://purl.obolibrary.org/obo/" --output /work/ontologies/imported.owl -vvv
 
 ## Annotations
- docker run -v ${PWD}:/work -w /work -e 'ROBOT_JAVA_ARGS=' -e 'JAVA_OPTS=' --rm -ti obolibrary/robot robot annotate --input /work/pbpko.owl --ontology-iri "https://github.com/Crispae/pbpko/blob/main/pbpko.owl" --version-iri "http://purl.obolibrary.org/obo/pbpko/releases/2024-06-25/pbpko.owl" --annotation-file /work/annotation.ttl --output pbpko-annotated.owl
+docker run -v ${PWD}:/work -w /work -e 'ROBOT_JAVA_ARGS=' -e 'JAVA_OPTS=' --rm -ti obolibrary/robot robot annotate --input /work/ontologies/pbpko.owl --ontology-iri "https://github.com/Crispae/pbpko/blob/main/pbpko.owl" --version-iri "http://purl.obolibrary.org/obo/pbpko/releases/2024-10-09/pbpko.owl" --annotation-file /work/annotations/annotation.ttl --output /work/ontologies/pbpko.owl