"error initializing LibGit2 module" when CA certificates not found #18693
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What does |
tkelman
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system:linux
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If you see anything in there about |
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One curiosity is that if I do a Then: |
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I'm not sure what to make of the libuv failure. Does it persist after |
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Can you also check |
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After |
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Something is very wrong, but I'm not sure if it's in Julia's makefiles or local to your particular clone. Does a build from scratch work correctly (maybe in a new clone to at least keep this build's copies of llvm and openblas around if they're still working)? |
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The directory I will wipe the cache and try again. |
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@tkelman Just finished a re-clone (everything deleted and recreated from scratch) of latest v 0.6 dev, and make is successful but again, will not launch as above. |
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I just hit this on power: |
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Same here, Arch Linux x86-64, both libgit2 and libssh2 are properly linked to mbedtls. Seems like |
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It isn't finding the CA certificates, after trying:
In other words, this is failing. EDIT: on my Debian systems, "/usr/lib/ssl/certs" symlinks to "/etc/ssl/certs", but on Arch this is not the case. Maybe we should add "/etc/ssl/certs" to the search path? As a workaround, exporting |
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On the my redhat machine at hand I have to use |
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Looks like we need a few non-debian-shaped defaults too for the cert locations. There's something in |
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On openSUSE Leap 42.1 Edit: I guess it is not the correct .pem. Edit 2: |
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We should also really try to make the error message clearer here if we can. |
colbec
changed the title
tkelman
changed the title
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I think I hit this error on Ubuntu, so it applies to Debian-based distros too: Setting the |
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It may also depend on which particular ca-certificates package sets you have installed, since those come in a few different variants. |
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Same problem on Fedora 24. $ ./julia
fatal: error thrown and no exception handler available.
Base.InitError(mod=:LibGit2, error=ErrorException("error initializing LibGit2 module"))
rec_backtrace at /home/rick/src/julia/julia/src/stackwalk.c:84
record_backtrace at /home/rick/src/julia/julia/src/task.c:238
jl_throw at /home/rick/src/julia/julia/src/task.c:560
__init__ at ./libgit2/libgit2.jl:539
unknown function (ip: 0x7fb07647cf08)
jl_call_method_internal at /home/rick/src/julia/julia/src/julia_internal.h:239 [inlined]
jl_apply_generic at /home/rick/src/julia/julia/src/gf.c:1852
jl_apply at /home/rick/src/julia/julia/src/julia.h:1377 [inlined]
jl_module_run_initializer at /home/rick/src/julia/julia/src/toplevel.c:83
_julia_init at /home/rick/src/julia/julia/src/init.c:702
julia_init at /home/rick/src/julia/julia/src/task.c:289
main at /home/rick/src/julia/julia/ui/repl.c:247
__libc_start_main at /lib64/libc.so.6 (unknown line)
unknown function (ip: 0x4013c8) |
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We'll have to find where the default cert search path is set and add more. Someone who has a source build in one of the problematic configurations will be best placed to test proposed additions. |
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The patch we are carrying against mbedtls is setting these defaults. julia/deps/patches/libgit2-mbedtls.patch Line 295 in f241e23 |
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It honors |
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We also have some code here Lines 456 to 459 in b36141f make binary-dist to copy the build system's certs into the binary-dist tarball. If that snippet works more broadly, we could move it into deps/libgit2.mk and have it always run?
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At least on Linux the system's certs are meant to be upgraded over-time and On Fri, 30 Sep 2016 at 05:53 Tony Kelman notifications@github.com wrote:
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@TotalVerb I'm going to try to build Julia from source, using your fix if I get the same error while building, but the error I report above comes from the julia from the ubuntu package repositories, I think your fix doesn't work on that, since that julia is already built. |
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@Ismael-VC Now that is an install case I never thought of when making the Julia PPA. What does |
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@staticfloat the output of that and also |
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Can you show me what files are sitting in |
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It might also be named |
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@staticfloat here is what's in that path: ismaelvc@TOYBOX ~ % tree /usr/lib/ssl
/usr/lib/ssl
├── certs -> /etc/ssl/certs
├── misc
│ ├── CA.pl
│ ├── CA.sh
│ ├── c_hash
│ ├── c_info
│ ├── c_issuer
│ ├── c_name
│ └── tsget
├── openssl.cnf -> /etc/ssl/openssl.cnf
└── private -> /etc/ssl/private
3 directories, 8 files |
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What's inside certs?
On Sat, Nov 26, 2016, 22:03 Ismael Venegas Castelló < ***@***.***> wrote:
@staticfloat <https://github.com/staticfloat> here is what's in that path:
***@***.*** ~ % tree /usr/lib/ssl
/usr/lib/ssl
├── certs -> /etc/ssl/certs
├── misc
│ ├── CA.pl
│ ├── CA.sh
│ ├── c_hash
│ ├── c_info
│ ├── c_issuer
│ ├── c_name
│ └── tsget
├── openssl.cnf -> /etc/ssl/openssl.cnf
└── private -> /etc/ssl/private
3 directories, 8 files
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Lots of ismaelvc@TOYBOX ~ % tree /usr/lib/ssl/certs | grep -i git
1 ismaelvc@TOYBOX ~ % |
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Fengyang is right. It's called "certs/ca-certificates.crt". I believe there
is a PR open right now to fix this.
On Sat, Nov 26, 2016, 22:27 Ismael Venegas Castelló < ***@***.***> wrote:
Lots of .pems I don't see anything with git:
- https://gist.github.com/Ismael-VC/a8341a115139a6823946d9b6c0b2b517
1 ***@***.*** ~ % tree /usr/lib/ssl/certs | grep -i git :( 1 ***@***.*** ~ %
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I'm getting the same error with the latest master, but setting
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Please gist the output of |
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Here it is. |
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Not solved. On one of the clusters I use, I just got the error again and I can fix it with |
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What distribution is it? I've never seen one with a name so strange. Is that the cert file that gets used by |
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Anyone who still has an issue here, try writing a patch similar to #19390 adding a case for wherever your system has the certs, since almost everyone else is covered by the existing cases. |
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I don't see this issue anymore |
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I investigated this further and think there is a different problem in my case. Opened a new issue #24625. |
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Is this still an issue? |
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All OK here. |
Using openSUSE Leap 42.1:
24 hours ago a git pull followed by a
make && make testallran fine. This morning I had an error in make:I thought I had fixed this with
make -C deps distclean-libgit2 distclean-mbedtls distclean-libssh2which allowedmaketo run to the end. However now Julia 0.6 fails to launch with:Prebuilt Julia 0.5 works fine.
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