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Lieber Institute for Brain Development

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  1. spatialLIBD spatialLIBD Public

    Code for the spatialLIBD R/Bioconductor package and shiny app

    R 83 17

  2. HumanPilot HumanPilot Public

    Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project

    HTML 71 29

  3. recount3 recount3 Public

    Explore and download data from the recount3 project

    R 31 4

  4. 10xPilot_snRNAseq-human 10xPilot_snRNAseq-human Public

    10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC

    HTML 21 9

  5. dotdotdot dotdotdot Public

    Example vignette for dotdotdot software

    MATLAB 18 11

  6. spatialDLPFC spatialDLPFC Public

    spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples

    HTML 17 3

Repositories

Showing 10 of 119 repositories
  • qsvaR Public

    Quality Surrogate Variable Analysis for Degradation Correction

    LieberInstitute/qsvaR’s past year of commit activity
    R 0 2 15 0 Updated Nov 5, 2024
  • spatialLIBD Public

    Code for the spatialLIBD R/Bioconductor package and shiny app

    LieberInstitute/spatialLIBD’s past year of commit activity
    R 83 17 23 0 Updated Oct 31, 2024
  • DeconvoBuddies Public

    Helper Functions for LIBD Deconvolution

    LieberInstitute/DeconvoBuddies’s past year of commit activity
    R 3 1 5 0 Updated Oct 31, 2024
  • jhpce_module_source Public

    JHPCE module source files

    LieberInstitute/jhpce_module_source’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 29, 2024
  • jhpce_module_config Public

    JHPCE module configuration files

    LieberInstitute/jhpce_module_config’s past year of commit activity
    Lua 4 0 0 0 Updated Oct 29, 2024
  • visiumStitched Public

    R package containing functions useful for stitching Visium capture areas. Related to the example human brain data described at http://research.libd.org/visiumStitched_brain/.

    LieberInstitute/visiumStitched’s past year of commit activity
    R 1 0 2 0 Updated Oct 24, 2024
  • BLA_crossSpecies Public

    Collaboration between Costa, Martinowich, and Hicks labs investigating basolateral amygdala cell-types across huamn and non-human primate species.

    LieberInstitute/BLA_crossSpecies’s past year of commit activity
    R 1 0 10 0 Updated Oct 23, 2024
  • smoking-nicotine-mouse Public

    Smoking mouse project

    LieberInstitute/smoking-nicotine-mouse’s past year of commit activity
    R 0 0 2 0 Updated Oct 21, 2024
  • ls_molecular-profiling Public

    ls_molecular-profiling

    LieberInstitute/ls_molecular-profiling’s past year of commit activity
    HTML 1 0 0 0 Updated Sep 25, 2024
  • spatial_DG_lifespan Public

    Spatial transcriptomics (Visium) in dentate gyrus of hippocampus over the lifespan

    LieberInstitute/spatial_DG_lifespan’s past year of commit activity
    HTML 0 0 0 0 Updated Sep 20, 2024
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