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[REVIEW]Upgrade the plugin to JupyterLab 3 #114

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b7333d9
added external plugin
doyend Dec 29, 2020
70e2364
use importlib metadata
doyend Dec 30, 2020
c28ab00
set the default
doyend Dec 30, 2020
f412ee4
support jupyterlab 3
doyend Dec 30, 2020
a3232f0
include package
doyend Dec 30, 2020
b4a4521
bump up the version
doyend Dec 30, 2020
a778eb3
update the install steps
doyend Dec 30, 2020
46cc89b
update the readme for installation steps
Dec 31, 2020
68879d5
move the rapids module as a plugin
doyend Jan 5, 2021
0ebc96c
moved the nemo module to plugin
doyend Jan 5, 2021
1ee08be
use the lastest bqplot which supports jupyterlab3
doyend Jan 7, 2021
5da31ca
seperate the independents tests
doyend Jan 12, 2021
ea0e7cc
update install instruction
yidong72 Jan 8, 2021
2ade4fd
added the missing test
doyend Jan 12, 2021
81baac7
move the notebooks and taskgraphs to the right places
doyend Jan 12, 2021
4084ed5
update the README
doyend Jan 12, 2021
7370c44
Update README.md
yidong72 Jan 12, 2021
aaf2e62
update links
doyend Jan 12, 2021
1bc935a
update docker file
doyend Jan 20, 2021
f2acc31
update the readme for jupyterlab 2 support
doyend Jan 21, 2021
f995d39
reduce dependence
doyend Jan 22, 2021
0cbbd0e
added notebook for simple example
doyend Jan 22, 2021
560a1d2
handles file cannot be found in the composite node
doyend Jan 26, 2021
9a74ae6
reduce the overhead of dask eager
doyend Jan 26, 2021
0e48707
remove the persist to save GPU memory
doyend Jan 26, 2021
0c94c9e
have the option of not eargly inferring the meta
doyend Jan 27, 2021
0e24a40
use fast layout algo
doyend Jan 30, 2021
ba34881
raise correct excpetion
doyend Feb 2, 2021
0d33ca5
move the modules to rapids_plugin
doyend Feb 5, 2021
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99 changes: 37 additions & 62 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,91 +1,66 @@
# gQuant - GPU Accelerated Graph Computation for Quantitative Analyst Tasks
# gQuant - Graph Computation Tool

**NOTE:** For the latest stable [README.md](https://github.com/rapidsai/gquant/blob/main/README.md) ensure you are on the `main` branch.

## What is gQuant?
gQuant is a collection of open-source GPU accelerated Python tools and examples for quantitative analyst tasks, built on top of the [RAPIDS AI](https://rapids.ai/) project, [Numba](https://numba.pydata.org/), and [Dask](https://dask.org/).

The examples range from simple accelerated calculation of technical trading indicators through defining workflows for interactively developing trading strategies and automating many typical tasks.
## What's Inside This Repo

The extensibility of the system is highlighted by examples showing how to create a dataframe flow graph, which allows for easy re-use and composability of higher level workflows.
There are a few projects inside this repo:

The examples also show how to easily convert a single-threaded solution into a Dask distributed one.
1. [gquant](gquant) - A graph computation toolkit that helps you to organize the workflows in graph computation.
2. [gquantlab](gquantlab) - A JupyterLab plugin that provides the UI interface for `gquant`.
3. [plugins](plugins) - A few gquant plugins with example notebooks.
1. [simple_example](plugins/simple_example) - A simple external plugin example for gQuant.
2. [rapids_plugin](plugins/rapids_plugin) - An external plugin with a set of nodes for quantitative analyst tasks, built on top of the [RAPIDS AI](https://rapids.ai/) project, [Numba](https://numba.pydata.org/), and [Dask](https://dask.org/).
3. [nemo_plugin](plugins/nemo_plugin) - An external plugin with a set of nodes that wraps the [NeMo library](https://github.com/NVIDIA/NeMo) .

These examples can be used as-is or, as they are open source, can be extended to suit your environments.
These projects are all released as independent Python projects with their own `setup.py` files.

## gQuant jupyterlab extension
## Screenshots
![Tuturial](tutorial.gif "Tutorial")
![Quick Demo](gquantlab_demo.gif "Demo")
The gQuant Juyterlab extension provides the user interface to build the dataframe flow TaskGraph easily. It takes advantage of the open sources projects like [jupyterlab](https://github.com/jupyterlab/jupyterlab), [ipywidget](https://github.com/jupyter-widgets/ipywidgets), [React](https://reactjs.org/) and [D3](https://d3js.org/). It features:
1. Takes full advantage of the JupyterLab project that the extension adds commands to Jupyterlab context menu, command palette and bind them with keyboard shortcuts to speed up the productivity.
2. Define a new TaskGraph file format `.gq.yaml` that can be edited in the Jupyterlab.
3. Visually presents the TaskGraph as a DAG graph. Users can zoom in and out, freely move the nodes around, and make connections between nodes.
4. Use the special `Ouput Collector` to gather the results and organize them in a tab widget. The IPython [rich display](https://ipython.readthedocs.io/en/stable/config/integrating.html#rich-display) is fully supported.
5. Visually shows the progress of graph evaluation and computation dependence.
6. Automatically generate the UI elements to edit and validate the Node configuration given the configuration JSON schema. It exposes the function API in a user-friendly way. User can change the configuration and re-run the computation to test out the hyperparameters easily.
7. Dynamically compute the input-output ports compatibility, dataframe columns names and types, ports types to prevent connection errors.
8. Nodes can have multiple output ports that can be used to generate different output types. E.g. some data loader Node provides both `cudf` and `dask_cudf` output ports. The multiple GPUs distributed computation computation is automatically enabled by switching to the `dask_cudf` output port.
9. Provides the standard API to extend your computation Nodes.
10. The composite node can encapsulate the TaskGraph into a single node for easy reuse. The composite node can be exported as a regular gQuant node without any coding.

### Binary pip installation

To install the gQuant graph computation library, first install the dependence libraries:
```bash
pip install dask[dataframe] distributed networkx
conda install python-graphviz ruamel.yaml numpy pandas
```
Then install gquant lib:


## Binary installation

### Install the gGuant
To install the gQuant graph computation library, run:
```bash
pip install gquant
```

To install JupyterLab plugin, install the following dependence libraries:
Or install `gquant` at the gQuant directory:
```bash
conda install nodejs ipywidgets
pip install .
```
Then install the gquantlab lib:

### Install the gQuantLab JupyterLab plugin
To install `gquantlab` JupyterLab plugin, make sure `nodejs` of version [12^14^15] is installed. E.g.:
```bash
pip install gquantlab==0.1.2
conda install -c conda-forge nodejs=12.4.0
```
Build the ipywidgets Jupyterlab plugin
Then install the `gquantlab`:
```bash
jupyter labextension install @jupyter-widgets/jupyterlab-manager@2.0
pip install gquantlab
```
If you launch the JupyterLab, it will prompt to build the new plugin. You can
explicitly build it by:
Or install `gquantlab` at the gquantlab directory:
```bash
jupyter lab build
pip install .
```

Note, the gQuant node plugins are defined in the `gquantrc` file. Check the `System environment` for details

### Install the gQuant plugins

### Prerequisites
- NVIDIA Pascal™ GPU architecture or better.
- [CUDA 9.2](https://developer.nvidia.com/cuda-92-download-archive) with driver v396.37+ or [CUDA 10.0](https://developer.nvidia.com/cuda-10.0-download-archive) with driver v410.48+.
- Ubuntu 16.04 or 18.04.
- [NVIDIA-docker v2+](https://github.com/nvidia/nvidia-docker/wiki/Frequently-Asked-Questions#how-do-i-install-20-if-im-not-using-the-latest-docker-version).


### Download data files

Run the following command at the project root diretory
Under the plugin root directory, install the plugin as normal python packages.
```bash
bash download_data.sh

pip install .
```

### Install
Note, gQuant node plugins can be registered in two ways:

gQuant source code can be downloaded from [GitHub](https://github.com/rapidsai/gquant).
1. (Recommended)Write a external plugin using 'entry point' to register it. Check the `plugins` directory for details
2. Register the plugin in `gquantrc` file. Check the `System environment` for details

- Git clone source code:

```bash
$ git clone https://github.com/rapidsai/gQuant.git
```

## Docker Install

- Build and run the container:

Expand All @@ -99,12 +74,12 @@ In the production mode, you can launch the container by following command and st
$ docker run --runtime=nvidia --rm -it -p 8888:8888 -p 8787:8787 -p 8786:8786 gquant/gquant:[tag from the build]
```

### Example notebooks
## Example notebooks

Example notebooks, tutorial showcasing, can be found in __notebooks__ folder.
Example notebooks, tutorial showcasing, can be found in __notebooks__ folder in the plugin directory.


### System environment
## System environment

There are a few system environment that the user can overwrite.

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6 changes: 3 additions & 3 deletions docker/build.sh
Original file line number Diff line number Diff line change
Expand Up @@ -153,12 +153,12 @@ RUN wget \
RUN conda install -y -c rapidsai -c nvidia -c conda-forge \
-c defaults rapids=$RAPIDS_VERSION cudatoolkit=$CUDA_STR python=3.7

RUN conda install -y -c conda-forge jupyterlab'<3.0.0'
RUN conda install -y -c conda-forge jupyterlab

RUN conda install -y -c conda-forge python-graphviz bqplot nodejs ipywidgets \
pytables mkl numexpr pydot flask pylint flake8 autopep8

RUN jupyter labextension install @jupyter-widgets/jupyterlab-manager@2.0 --no-build
RUN jupyter labextension install @jupyter-widgets/jupyterlab-manager --no-build
RUN jupyter labextension install bqplot --no-build
#RUN jupyter labextension install jupyterlab-nvdashboard --no-build
RUN jupyter lab build && jupyter lab clean
Expand All @@ -169,7 +169,7 @@ RUN pip install jupyterlab-nvdashboard
RUN jupyter labextension install jupyterlab-nvdashboard

## install the dask extension
RUN pip install "dask_labextension<5.0.0"
RUN pip install dask_labextension
RUN jupyter labextension install dask-labextension
RUN jupyter serverextension enable dask_labextension

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201 changes: 201 additions & 0 deletions gquant/LICENSE
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@@ -0,0 +1,201 @@
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