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[imaging browser] Fix Human dangling out of nowhere #8363

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merged 7 commits into from
Feb 14, 2023
Merged

[imaging browser] Fix Human dangling out of nowhere #8363

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7435fc7
fix Human dangling out of nowhere
cmadjar Feb 6, 2023
e4bed86
add some prints to figure out what is going on
cmadjar Feb 9, 2023
893a036
remove print
cmadjar Feb 9, 2023
fcbe986
fix order of QC status displayed?
cmadjar Feb 9, 2023
c251110
add comments to give context as to why the foreach loop is done on a…
cmadjar Feb 9, 2023
b7dc444
fix spacing
cmadjar Feb 9, 2023
b478b20
Rida said to always listen to Phan :)
cmadjar Feb 9, 2023
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5 changes: 5 additions & 0 deletions modules/imaging_browser/jsx/imagingBrowserIndex.js
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Original file line number Diff line number Diff line change
Expand Up @@ -167,6 +167,11 @@ class ImagingBrowserIndex extends Component {
type: 'multiselect',
options: options.pendingNew,
}},
{label: 'Entity Type', show: false, filter: {
name: 'entityType',
type: 'multiselect',
option: options.entityType,
}},
];
/**
* Adding columns based on the Imaging Browser Tabulated Scan Types
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7 changes: 7 additions & 0 deletions modules/imaging_browser/php/imaging_browser.class.inc
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Expand Up @@ -137,13 +137,20 @@ class Imaging_Browser extends \DataFrameworkMenu
$config = \NDB_Config::singleton();
$toTable_scan_types = $config->getSetting('tblScanTypes');

// get entity type options
$entityType = [
'Human' => 'Human',
'Scanner' => 'Scanner',
];

return [
'sites' => $siteList,
'projects' => $list_of_projects,
'visitQCStatus' => $visitQCStatus,
'sequenceTypes' => $sequenceTypes,
'pendingNew' => $pending,
'configLabels' => $toTable_scan_types,
'entityType' => $entityType,
];

}
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18 changes: 13 additions & 5 deletions modules/imaging_browser/php/imagingbrowserrowprovisioner.class.inc
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Expand Up @@ -107,9 +107,18 @@ class ImagingBrowserRowProvisioner extends \LORIS\Data\Provisioners\DBRowProvisi
$pass = [];
$coalesce_desc = [];

foreach ($scan_id_types as $id => $type) {
$pass[$id] = $DB->escape($type);
$qc[$id] = $DB->quote($type);
// in order to keep the same order as the order of modalities
// specified in the config module, loop through the
// $toTable_scan_types array that conserved the order with
// which modalities will be displayed (which is what the React
// side expects)
foreach ($toTable_scan_types as $type) {
if (!in_array($type, $scan_id_types)) {
continue;
}
$id = array_search($type, $scan_id_types);
$pass[$id] = $DB->escape($type);
$qc[$id] = $DB->quote($type);
$coalesce_desc[$id] = $DB->escape($type);
$case_desc[$id] = "
CASE
Expand Down Expand Up @@ -172,7 +181,6 @@ class ImagingBrowserRowProvisioner extends \LORIS\Data\Provisioners\DBRowProvisi
// =================================================
// Final query
// =================================================

parent::__construct(
"SELECT
p.Name as Site,
Expand All @@ -189,9 +197,9 @@ class ImagingBrowserRowProvisioner extends \LORIS\Data\Provisioners\DBRowProvisi
s.ID as sessionID,
GROUP_CONCAT(DISTINCT modality.Scan_type) as sequenceType,
$PendingNewquery as pending,
$modalities_subquery
s.CenterID as CenterID,
c.Entity_type as entityType,
$modalities_subquery
s.ProjectID
FROM psc AS p
JOIN session s ON (s.CenterID=p.CenterID)
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