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SED-ML L1V4: updated the way we keep track of / retrieve the type of …
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…our X and Y axes (opencor#2053).
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@agarny
agarny committed Sep 5, 2019
1 parent 2188d29 commit c55c576
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Showing 10 changed files with 39 additions and 39 deletions.
8 changes: 4 additions & 4 deletions models/tests/sedml/noble_1962_V_iK.sedml
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</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="linear"/>
<listOfCurves>
<curve id="curve2_1" xDataReference="xDataGenerator2_1" yDataReference="yDataGenerator2_1">
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</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve3_1" xDataReference="xDataGenerator3_1" yDataReference="yDataGenerator3_1">
<annotation>
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</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve4_1" xDataReference="xDataGenerator4_1" yDataReference="yDataGenerator4_1">
<annotation>
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8 changes: 4 additions & 4 deletions models/tests/sedml/noble_1962_V_time.sedml
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</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="linear"/>
<listOfCurves>
<curve id="curve2_1" xDataReference="xDataGenerator2_1" yDataReference="yDataGenerator2_1">
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</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve3_1" xDataReference="xDataGenerator3_1" yDataReference="yDataGenerator3_1">
<annotation>
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</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve4_1" xDataReference="xDataGenerator4_1" yDataReference="yDataGenerator4_1">
<annotation>
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8 changes: 4 additions & 4 deletions models/tests/sedml/noble_1962_gL_time.sedml
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</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="linear"/>
<listOfCurves>
<curve id="curve2_1" xDataReference="xDataGenerator2_1" yDataReference="yDataGenerator2_1">
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</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve3_1" xDataReference="xDataGenerator3_1" yDataReference="yDataGenerator3_1">
<annotation>
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</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve4_1" xDataReference="xDataGenerator4_1" yDataReference="yDataGenerator4_1">
<annotation>
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8 changes: 4 additions & 4 deletions models/tests/sedml/noble_1962_iK_V.sedml
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</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="linear"/>
<listOfCurves>
<curve id="curve2_1" xDataReference="xDataGenerator2_1" yDataReference="yDataGenerator2_1">
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</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve3_1" xDataReference="xDataGenerator3_1" yDataReference="yDataGenerator3_1">
<annotation>
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</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve4_1" xDataReference="xDataGenerator4_1" yDataReference="yDataGenerator4_1">
<annotation>
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8 changes: 4 additions & 4 deletions models/tests/sedml/noble_1962_iK_time.sedml
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</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="linear"/>
<listOfCurves>
<curve id="curve2_1" xDataReference="xDataGenerator2_1" yDataReference="yDataGenerator2_1">
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</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve3_1" xDataReference="xDataGenerator3_1" yDataReference="yDataGenerator3_1">
<annotation>
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</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve4_1" xDataReference="xDataGenerator4_1" yDataReference="yDataGenerator4_1">
<annotation>
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6 changes: 3 additions & 3 deletions models/tests/sedml/noble_1962_remote.sedml
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</dataGenerator>
</listOfDataGenerators>
<listOfOutputs>
<plot2D id="plot1">
<plot2D id="plot1" name="Membrane potential">
<annotation>
<properties xmlns="http://www.opencor.ws/">
<backgroundColor>#13000080</backgroundColor>
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</curve>
</listOfCurves>
</plot2D>
<plot2D id="plot2">
<plot2D id="plot2" name="Currents">
<annotation>
<properties xmlns="http://www.opencor.ws/">
<backgroundColor>#12108001</backgroundColor>
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</curve>
</listOfCurves>
</plot2D>
<plot2D id="plot3">
<plot2D id="plot3" name="Gating variables">
<annotation>
<properties xmlns="http://www.opencor.ws/">
<backgroundColor>#13800002</backgroundColor>
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8 changes: 4 additions & 4 deletions models/tests/sedml/noble_1962_time_V.sedml
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</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="linear"/>
<listOfCurves>
<curve id="curve2_1" xDataReference="xDataGenerator2_1" yDataReference="yDataGenerator2_1">
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</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve3_1" xDataReference="xDataGenerator3_1" yDataReference="yDataGenerator3_1">
<annotation>
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</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve4_1" xDataReference="xDataGenerator4_1" yDataReference="yDataGenerator4_1">
<annotation>
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8 changes: 4 additions & 4 deletions models/tests/sedml/noble_1962_time_gL.sedml
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</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="linear"/>
<listOfCurves>
<curve id="curve2_1" xDataReference="xDataGenerator2_1" yDataReference="yDataGenerator2_1">
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</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve3_1" xDataReference="xDataGenerator3_1" yDataReference="yDataGenerator3_1">
<annotation>
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</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve4_1" xDataReference="xDataGenerator4_1" yDataReference="yDataGenerator4_1">
<annotation>
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8 changes: 4 additions & 4 deletions models/tests/sedml/noble_1962_time_iK.sedml
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Original file line number Diff line number Diff line change
Expand Up @@ -205,7 +205,7 @@
</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="linear"/>
<listOfCurves>
<curve id="curve2_1" xDataReference="xDataGenerator2_1" yDataReference="yDataGenerator2_1">
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</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve3_1" xDataReference="xDataGenerator3_1" yDataReference="yDataGenerator3_1">
<annotation>
Expand Down Expand Up @@ -333,8 +333,8 @@
</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve4_1" xDataReference="xDataGenerator4_1" yDataReference="yDataGenerator4_1">
<annotation>
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8 changes: 4 additions & 4 deletions models/tests/sedml/noble_1962_time_time.sedml
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Original file line number Diff line number Diff line change
Expand Up @@ -205,7 +205,7 @@
</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="linear"/>
<listOfCurves>
<curve id="curve2_1" xDataReference="xDataGenerator2_1" yDataReference="yDataGenerator2_1">
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</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve3_1" xDataReference="xDataGenerator3_1" yDataReference="yDataGenerator3_1">
<annotation>
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</zoomRegion>
</properties>
</annotation>
<xAxis type="linear"/>
<yAxis type="linear"/>
<xAxis type="log10"/>
<yAxis type="log10"/>
<listOfCurves>
<curve id="curve4_1" xDataReference="xDataGenerator4_1" yDataReference="yDataGenerator4_1">
<annotation>
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