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Description
Welcome to deepTools GitHub repository! Before opening the issue please check
that the following requirements are met :
-
Search whether this issue (or a similar issue) has been solved before
using the search tab above. Link the previous issue if appropriate below. -
Paste your deepTools version (
deeptools --version
) and your python
version (python --version
) below.
deeptools 3.4.3
python 3.8.2 -
Paste the full deepTools command that produces the issue below
(ignore if you simply spotted the issue in the code/documentation).
plotHeatmap -m xx4_24.mat.gz
-out xx4_24.png
--sortUsing sum -
Paste the output printed on screen from the command that produces the issue
below (ignore if you simply spotted the issue in the code/documentation).
Traceback (most recent call last):
File "/hpc/packages/minerva-centos7/py_packages/3.8/bin/plotHeatmap", line 12, in
main(args)
File "/hpc/packages/minerva-centos7/py_packages/3.8/lib/python3.8/site-packages/deeptools/plotHeatmap.py", line 847, in main
plotMatrix(hm,
File "/hpc/packages/minerva-centos7/py_packages/3.8/lib/python3.8/site-packages/deeptools/plotHeatmap.py", line 743, in plotMatrix
plt.savefig(outFileName, bbox_inches='tight', pdd_inches=0, dpi=dpi, format=image_format)
File "/hpc/packages/minerva-centos7/python/3.8.2/lib/python3.8/site-packages/matplotlib/pyplot.py", line 954, in savefig
res = fig.savefig(*args, **kwargs)
File "/hpc/packages/minerva-centos7/python/3.8.2/lib/python3.8/site-packages/matplotlib/figure.py", line 3274, in savefig
self.canvas.print_figure(fname, **kwargs)
File "/hpc/packages/minerva-centos7/python/3.8.2/lib/python3.8/site-packages/matplotlib/backend_bases.py", line 2338, in print_figure
result = print_method(
File "/hpc/packages/minerva-centos7/python/3.8.2/lib/python3.8/site-packages/matplotlib/backend_bases.py", line 2204, in
print_method = functools.wraps(meth)(lambda *args, **kwargs: meth(
File "/hpc/packages/minerva-centos7/python/3.8.2/lib/python3.8/site-packages/matplotlib/_api/deprecation.py", line 385, in wrapper
arguments = signature.bind(*inner_args, **inner_kwargs).arguments
File "/hpc/packages/minerva-centos7/python/3.8.2/lib/python3.8/inspect.py", line 3025, in bind
return self._bind(args, kwargs)
File "/hpc/packages/minerva-centos7/python/3.8.2/lib/python3.8/inspect.py", line 3014, in _bind
raise TypeError(
TypeError: got an unexpected keyword argument 'pdd_inches'