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Fix for AnnotatedSliceDataset #276

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merged 2 commits into from
Oct 24, 2022
Merged

Fix for AnnotatedSliceDataset #276

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bb8a3d7
Fix for AnnotatedSliceDataset
NikolasMorshuis Oct 24, 2022
7c5a876
fixed style
NikolasMorshuis Oct 24, 2022
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16 changes: 15 additions & 1 deletion fastmri/data/mri_data.py
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Original file line number Diff line number Diff line change
Expand Up @@ -554,6 +554,17 @@ def get_annotation(self, empty_value, row):
"height": -1,
"label": "",
}
elif row.study_level == "Yes":
annotation = {
"fname": str(row.file),
"slice": "",
"study_level": "Yes",
"x": -1,
"y": -1,
"width": -1,
"height": -1,
"label": str(row.label),
}
else:
annotation = {
"fname": str(row.file),
Expand All @@ -569,7 +580,10 @@ def get_annotation(self, empty_value, row):

def download_csv(self, version, subsplit, path):
# request file by git hash and mri type
url = f"https://raw.githubusercontent.com/microsoft/fastmri-plus/{version}/Annotations/{subsplit}.csv"
if version is None:
url = f"https://raw.githubusercontent.com/microsoft/fastmri-plus/main/Annotations/{subsplit}.csv"
else:
url = f"https://raw.githubusercontent.com/microsoft/fastmri-plus/{version}/Annotations/{subsplit}.csv"
request = requests.get(url, timeout=10, stream=True)

# create temporary folders
Expand Down