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Touch-up
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rleonid committed Jan 26, 2018
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Expand Up @@ -99,8 +99,8 @@ one can calculate:

$ samtools fastq ${SAMPLE}.bam > ${SAMPLE}_filtered.fastq

4. Infer types:
4. Infer types (see `$ multi_par --help` for further details):

$ multi_par path-to-imgthla/aignments ${SAMPLE}_filtered.fast -o ${SAMPLE}_output.tsv
$ multi_par path-to-imgthla/aignments ${SAMPLE}_filtered.fastq -o ${SAMPLE}_output.tsv

See `$ multi_par --help` for further detail and optimizations.

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