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Deprecate particles #1303

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merged 3 commits into from
May 20, 2022
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@mattwthompson mattwthompson commented May 19, 2022

Implements #1302 (comment)

There are a lot of method, variable, etc. names in the hierarchy implementation that name things particle, and I think maybe these should be atom instead?

@mattwthompson mattwthompson changed the base branch from master to topology-biopolymer-refactor May 19, 2022 22:23
@mattwthompson mattwthompson changed the title Remove particles Deprecate particles May 19, 2022
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❗ No coverage uploaded for pull request base (topology-biopolymer-refactor@9548cd0). Click here to learn what that means.
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@mattwthompson mattwthompson marked this pull request as ready for review May 20, 2022 00:34
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Looks great. Thanks Matt!

@@ -2092,18 +2046,6 @@ def bond(self, bond_topology_index):
return molecule.bond(bond_molecule_index)
this_molecule_start_index += molecule.n_bonds

def add_particle(self, particle):
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Ha! Good catch.

@mattwthompson mattwthompson merged commit ab3363f into topology-biopolymer-refactor May 20, 2022
@mattwthompson mattwthompson deleted the remove-particles branch May 20, 2022 19:52
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2 participants