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@VEuPathDB VEuPathDB Bioinformatics Resource Center

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    344 repositories

    • vdi-service

      Public
      vdi
      Kotlin
      •
      Apache License 2.0
      •0•0•32•2•Updated Mar 10, 2025Mar 10, 2025

    • ApiCommonWorkflow

      Public
      Perl
      •
      Apache License 2.0
      •1•0•0•1•Updated Mar 10, 2025Mar 10, 2025

    • EbrcModelCommon

      Public
      Java
      •
      Apache License 2.0
      •2•1•4•1•Updated Mar 10, 2025Mar 10, 2025

    • bulk-rnaseq-nextflow

      Public
      Bulk RNASeq Workflow
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Mar 10, 2025Mar 10, 2025

    • ApiCommonModel

      Public
      Perl
      •
      Apache License 2.0
      •0•1•1•9•Updated Mar 10, 2025Mar 10, 2025

    • service-eda

      Public
      Repo containing EDA web service
      Java
      •
      Apache License 2.0
      •0•0•24•4•Updated Mar 10, 2025Mar 10, 2025

    • vdi-plugin-wrangler

      Public
      General purpose VDI plugin to process files for EDA loading using the study-wrangler
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 10, 2025Mar 10, 2025

    • ApiCommonData

      Public
      Perl
      •
      Apache License 2.0
      •3•3•0•2•Updated Mar 10, 2025Mar 10, 2025

    • study-wrangler

      Public
      Code to keep study data tidy
      R
      •
      Apache License 2.0
      •0•0•16•0•Updated Mar 10, 2025Mar 10, 2025

    • vdi-plugin-handler-server

      Public
      VDI Service Plugin Handler Server
      vdi
      Kotlin
      •
      Apache License 2.0
      •0•0•6•3•Updated Mar 10, 2025Mar 10, 2025

    • web-monorepo

      Public
      A monorepo that contains all frontend code for VEuPathDB websites
      TypeScript
      •
      Apache License 2.0
      •0•3•198•21•Updated Mar 8, 2025Mar 8, 2025

    • ApiCommonWebsite

      Public
      Perl
      •
      Apache License 2.0
      •1•3•1•4•Updated Mar 8, 2025Mar 8, 2025

    • EbrcWebsiteCommon

      Public
      Perl
      •
      Apache License 2.0
      •3•3•9•4•Updated Mar 8, 2025Mar 8, 2025

    • install

      Public
      Shell
      •
      Apache License 2.0
      •2•0•1•21•Updated Mar 7, 2025Mar 7, 2025

    • lib-eda-subsetting

      Public
      Provides Java interface to query and provide EDA data and metadata from a database
      Java
      •
      Apache License 2.0
      •0•0•5•0•Updated Mar 7, 2025Mar 7, 2025

    • FgpUtil

      Public
      Java
      •
      Apache License 2.0
      •2•0•2•2•Updated Mar 7, 2025Mar 7, 2025

    • vdi-plugin-genelist

      Public
      Python
      •
      Apache License 2.0
      •0•0•2•0•Updated Mar 7, 2025Mar 7, 2025

    • vdi-plugin-rnaseq

      Public
      Perl
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • ApidbSchema

      Public
      SQL and scripts to install the ApiDB schema
      PLSQL
      •
      Apache License 2.0
      •0•0•0•2•Updated Mar 7, 2025Mar 7, 2025

    • vdi-plugin-isasimple

      Public
      Perl
      •
      Apache License 2.0
      •0•0•2•0•Updated Mar 7, 2025Mar 7, 2025

    • vdi-plugin-biom

      Public
      Python
      •
      Apache License 2.0
      •0•0•3•0•Updated Mar 7, 2025Mar 7, 2025

    • vdi-plugin-bigwig

      Public
      Perl
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • example-jaxrs-container-service

      Public template
      Demo of a containerized Raml & JaxRS based service project.
      platformtemplateserviceexample
      Java
      •
      Apache License 2.0
      •0•0•6•0•Updated Mar 7, 2025Mar 7, 2025

    • lib-jaxrs-container-core

      Public
      Core library for VEuPathDB JaxRS container services
      librarycontainersjaxrs
      Java
      •
      Apache License 2.0
      •0•0•12•1•Updated Mar 7, 2025Mar 7, 2025

    • vdi-component-common

      Public
      Common components for VDI projects
      vdi
      Kotlin
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • lib-jackson-singleton

      Public
      Preconfigured Jackson & Utils
      jsonlibraryjackson
      Kotlin
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • vdi-component-json

      Public
      Shared JSON handling library for VDI projects.
      kotlinjsonjvmjacksonvdi
      Kotlin
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • orthoFinder-nextflow

      Public
      orthoFinder Nextflow workflow
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • websiteconf

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • StaticContent

      Public
      HTML
      •
      Apache License 2.0
      •6•0•0•4•Updated Mar 6, 2025Mar 6, 2025