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    • paml

      Public
      PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **technical issues** on this repository (e.g., compiling, programs abort, etc.). Problems with input data (e.g., error/warning messages) & general questions should be posted at https://groups.google.com/g/pamlsoftware?pli
      C
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      GNU General Public License v3.0
      •23•140•8•0•Updated Jan 24, 2025Jan 24, 2025

    • hhsd

      Public
      HHSD is a python pipeline for hierarchical heuristic species delimitation using genomic sequence data under the multispecies coalescent model. It drives data analysis using the program bpp.
      Python
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      GNU General Public License v3.0
      •1•4•0•0•Updated Jan 22, 2025Jan 22, 2025

    • fw

      Public
      C
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      GNU General Public License v3.0
      •1•1•1•0•Updated Feb 19, 2024Feb 19, 2024

    • 3s

      Public
      C
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      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 11, 2023Jul 11, 2023

    • paml-tutorial

      Public
      paml documentation and tutorials
      HTML
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      GNU General Public License v3.0
      •7•52•0•0•Updated Jun 30, 2023Jun 30, 2023

    • genotypecall

      Public
      C
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      GNU General Public License v3.0
      •1•2•0•0•Updated Mar 23, 2023Mar 23, 2023

    • bpp-subsample-data

      Public
      This program takes bpp sequence data file as input and samples sequences for 3 or 4 species
      GNU General Public License v3.0
      •1•1•0•0•Updated Nov 26, 2022Nov 26, 2022

    • bpp-msci-D-process-mcmc

      Public
      C
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      GNU General Public License v3.0
      •1•3•0•0•Updated Apr 13, 2022Apr 13, 2022

    • bpp3

      Public
      C
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      GNU General Public License v3.0
      •1•1•0•0•Updated Jul 16, 2021Jul 16, 2021