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46 Open 144 Closed
46 Open 144 Closed
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Issues list

--max-edge-jump vs --max-path-jump
#450 opened Mar 2, 2025 by COMInterop
SNP and SV Identification in PGGB
#449 opened Feb 28, 2025 by zhengluo-zz
Command terminated by signal 9
#447 opened Feb 12, 2025 by ChuanzhengWei
10
associative array for threads and/or tool flags
#446 opened Jan 26, 2025 by nicolo-tellini
Pangenome graph annotation tools
#444 opened Jan 23, 2025 by atomemeteore
Build a pangenome from a multiple sequence alignment
#443 opened Jan 20, 2025 by danimelsz
failed to generate gcsa file using vg index
#442 opened Jan 15, 2025 by pliang64
1
PanSN naming issue in pggb fastas
#437 opened Jan 1, 2025 by SquRunner
2
Sequence divergence and super pangenome
#435 opened Dec 22, 2024 by jp-jong
Inv output question
#434 opened Dec 18, 2024 by GLagunas-Robles
2
How does tandem repeat TR map to the PGGB-constructed pan-genome
#433 opened Dec 3, 2024 by dong1yang
conda installation problem
#432 opened Dec 2, 2024 by HuangYihang1222
8
Generate multiqc report only
#430 opened Nov 19, 2024 by vatanparast
6
Fail to deconstruct VCF from the PGGB GFA file
#429 opened Nov 19, 2024 by isaamael
7
Not completed in overlap_collect step
#425 opened Nov 10, 2024 by kjyunm
2
PGGB takes more than 96 hours of walltime on HPC
#407 opened Sep 2, 2024 by kiratalreja3
1
How to handle plasmid sequences for bacterial assemblies
#406 opened Aug 30, 2024 by UpalabdhaD
Follow up on issues with Singularity
#404 opened Aug 16, 2024 by cjfields
6
PGGB singularity vg deconstruct not recognizing sample prefix
#399 opened Jun 7, 2024 by SimonaSecomandi
1
Recommended practices for downstream analyses
#394 opened Apr 27, 2024 by agolicz
the effect of n_mappings question Further information is requested
#382 opened Mar 19, 2024 by subwaystation
seqwish fails when --output-dir contains commas enhancement New feature or request
#356 opened Nov 24, 2023 by kdm9
1
Command terminated by signal 8
#345 opened Oct 25, 2023 by clemgoub
2
the parameters to build pangenome for metagenomes
#337 opened Oct 17, 2023 by zwh82
2
How to handle when two contigs from the same assembly sligtly overlap
#329 opened Sep 15, 2023 by Isoris
7
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