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Issues list

gnu parallel for wfmash, seqwish and smoothxg
#445 by nicolo-tellini was closed Feb 1, 2025
1
Question : odd output in graph building between two chromosomes
#441 by atomemeteore was closed Jan 12, 2025
4
#question
#440 by atomemeteore was closed Jan 12, 2025
pggb run keeps failing at the wfmash step
#439 by pliang64 was closed Jan 16, 2025
2
Reference sketch empty
#427 by danimelsz was closed Nov 25, 2024
2
Assertion `queryLen <= querySize' failed
#426 by ivaneskos was closed Nov 18, 2024
3
Running error with Singularity image
#422 by shilinti was closed Oct 28, 2024
4
Question about pangenome building in species with high level of large translocations
#421 by GabrieleRigano99 was closed Oct 28, 2024
2
The question about vg version of pggb
#415 by zwh82 was closed Oct 9, 2024
5
Invalid argument on log file
#412 by vikshiv123 was closed Oct 23, 2024
15
wfmash to speed up question Further information is requested
#403 by OZTaekOppa was closed Oct 16, 2024
1
Unable to generate giraffe indexes for PGGB graph
#400 by KopalliV was closed Oct 16, 2024
1
mismatched line lengths at line 3 within sequence
#398 by Ahmad-40 was closed Oct 16, 2024
1
erro about paf2net.py
#393 by unavailable-2374 was closed Apr 26, 2024
2
run without errors and outputs bug Something isn't working
#388 by Gon1976 was closed Apr 10, 2024
7
Memory size required to build large genomes
#385 by Lucio-Yang was closed Nov 25, 2024
14
For aligning chromosomes of different species over 100MYA or div is it better to use .masked files? question Further information is requested
#383 by Isoris was closed Oct 16, 2024
6
pggb: option requires an argument -- 'i'
#379 by RobStr12 was closed Sep 18, 2024
1
what dose "consensus path" generated with parameter -Q mean
#378 by yipukangda was closed Oct 16, 2024
3
A null vcf file
#377 by dudududu12138 was closed Mar 18, 2024
3
Setting the poa-length-target(s)
#375 by jonahcullen was closed Oct 16, 2024
1
Command terminated by signal 6
#374 by yeeus was closed Mar 13, 2024
4
container creation failed
#373 by yeeus was closed Feb 23, 2024
computational efficiency of pggb question Further information is requested
#370 by yihangs was closed Oct 16, 2024
3
Gradual increase of pan-genomes question Further information is requested
#364 by Tonitsk8264 was closed Oct 16, 2024
1
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