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351 Open 7,657 Closed
351 Open 7,657 Closed
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Issues list

Strong impact of number of ADT PCs on WNN UMAP?
#9482 opened Nov 14, 2024 by erflynn
FeaturePlot for spatial transcriptomics data does not work bug Something isn't working
#9481 opened Nov 14, 2024 by Yijia-Jiang
Error in validObject(object = object) : invalid class “Assay5” object: Layers must be two-dimensional objects
#9476 opened Nov 13, 2024 by sguttr
1
Problem with LoadXenium (+ self-fix that i need a sanity check on) and advice on labelling sample tissue microarray
#9474 opened Nov 12, 2024 by YfCem
Setting Expression Threshold for Molecule Visualization in ImageDimPlot
#9472 opened Nov 11, 2024 by sallyseullee-0821
1
Could you please tell me how to use ReadXenium() to load the New 10x Xenium Bundle?_no more "cell_feature_matrix"
#9468 opened Nov 10, 2024 by imamura-masaki
DietSeurat doesn't drop layers from objects bug Something isn't working duplicate This issue or pull request already exists
#9464 opened Nov 8, 2024 by rharao
3
Is there a vignette/updated pipeline for Akoya qptiffs?
#9463 opened Nov 8, 2024 by salasd
Incorrect Layer Naming and Barcode Misalignment When Merging Seurat Objects Missing an Assay bug Something isn't working
#9462 opened Nov 8, 2024 by maartenciers
Error in SCTransform: Missing cell.attr Argument When Regressing mitoRatio bug Something isn't working
#9461 opened Nov 7, 2024 by EsToHi
Error with LoadVizgen in Seurat: Possible Issue with .obj File or Manual Loading Needed?
#9460 opened Nov 7, 2024 by drchubos
How do I subset based on RAW counts?
#9459 opened Nov 7, 2024 by alexwskh
5
Error: make_cell_attr - log_umi contains NA, NaN, or infinite value in SCTransform
#9456 opened Nov 6, 2024 by unikill066
1
SpatialPlot not working as its supposed to bug Something isn't working
#9455 opened Nov 6, 2024 by Aditya-Gautam20
7
Seurat V5 integration error: "Error in UseMethod(generic = "Assays", object = object) "
#9454 opened Nov 6, 2024 by cherrie-g
1
The example file does not exist.
#9453 opened Nov 6, 2024 by yoyoong
Mismatch in Dotplot of raw counts and normalized data
#9452 opened Nov 4, 2024 by Rong-ao
How to analysis the DEGs between smartseq2 data and 10x data
#9451 opened Nov 2, 2024 by Linxiaobuskiy
Zero score when annotate new visium dataset using a reference
#9450 opened Nov 2, 2024 by Chrisdoan9
Loading Pre-Annotated Regions for Visium Analysis
#9448 opened Nov 1, 2024 by abadgerw
Demultiplexing with hashtag oligos vignette - bad link documentation Error in documentation
#9445 opened Oct 31, 2024 by jkelrod97
SCTransform + Harmony integration --> FindMarkers issue
#9444 opened Oct 31, 2024 by bbmorris1
Why do FindMarkers DE p-values vary significantly between V4 and V5? bug Something isn't working
#9443 opened Oct 31, 2024 by mauritsunkel
SE values for log-FC output of FindMarkers enhancement New feature or request
#9441 opened Oct 30, 2024 by mirG1234
How to fix Warning: Layer counts isn't present in the assay object
#9439 opened Oct 30, 2024 by skofm
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