Skip to content

Commit

Permalink
santizises link
Browse files Browse the repository at this point in the history
  • Loading branch information
Geert van Geest committed Aug 29, 2024
1 parent 625fd30 commit d0014cf
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion docs/day1/alignment_advanced.md
Original file line number Diff line number Diff line change
Expand Up @@ -264,7 +264,7 @@ mother lib1 H0164.2.ALXX140820 H0164.2
son lib3 H0164.6.ALXX140820 H0164.6
```

**Exercise** Generate a script called `C02_add_readgroups.sh` (in `~/project/scripts/C-all_samples`) to loop over the tab-delimited file (have a look at the last exercise in [Setup](../server_login#loops)), and add the correct readgroups to the bam file of each sample with `gatk AddOrReplaceReadGroups`.
**Exercise** Generate a script called `C02_add_readgroups.sh` (in `~/project/scripts/C-all_samples`) to loop over the tab-delimited file (have a look at the last exercise in [Setup](server_login.md#loops)), and add the correct readgroups to the bam file of each sample with `gatk AddOrReplaceReadGroups`.

??? hint

Expand Down

0 comments on commit d0014cf

Please # to comment.