ATAC-seq peak-calling and QC analysis pipeline

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

Pipeline for Universal Mapping of ATAC-seq

Sanger Cellular Genetics single-cell ATAC-seq pipeline.

Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.

See the main fork of this repository here >>>

Atac-Seq pipeline

Preprocessing workflow for ATAC-seq and ChIP-seq data

nextflow ATACseq pipeline for GG02

ATAC-seq pipeline written in Nextflow

ATAC_Seq Analysis Pipeline using Nextflow framework.

A pipeline for ATAC-seq preprocessing, alignment, peak calling, and read counting. Built on the SRAlign pipeline.